Clone Read LE_HBa0013P12_T7_128604

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0013P12_T7_128604
Primer
T7
ID from Seq. Facility
LE_HBa_013_P12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
775 trimmed for vector and quality, 907 raw
Genbank Accession
DU050766
Sequence
>LE_HBa0013P12_T7_128604 (raw untrimmed)
CTCGGACCCGGGGTATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCTTGAATAGATTTCACCTTCACCACCGTATAAGGCAAAAGATCAGTACCCC
AAGGTCTAACATCGAACCTATCAAACCAACCAATGNGGGGACCTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGC
TATTATTGTATGAAAATTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGT
TCGCTCATACTGACCATCGGTCTGAGGAAGGAACGCGGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAGTGTTTTCCAAAACATAGAGGTAAAC
TGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGCACCACTTCCAAGATGTAAAGTTTGGCTAACTTCTCTGCATTTTAAGTCACCT
TGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAATTACCCAAATGGAATCAAACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCGT
TGCGATTCTCTCCTATTTCCATTCCGGAATGGGCATCCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGATAGTTTGGACATTTG
GCAATAAAGTTCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACAGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTG
AACTATGAACCTCTGTCAGAATAGTGTTGAATCAAATCATCTACCCCGGGGAACGCATTCCCCTTTCCCTTGTTTCCTCCAAAACACCCTTCCCTCATTC
AATTTTT
>LE_HBa0013P12_T7_128604 (trimmed for quality and cloning vector)
AGCTTTTCTTGAATAGATTTCACCTTCACCACCGTATAAGGCAAAAGATCAGTACCCCAAGGTCTAACATCGAACCTATCAAACCAACCAATGNGGGGAC
CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCTGCTAAGGGTAAGAAGCTATCCC
AATGGCCACCAAACTCTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCGCTCATACTGACCATCGGTCTGAGGAAGGAACGCGGTACT
AAGGTCCAACCTAGTACCCAATTCCGCATGCAGTGTTTTCCAAAACATAGAGGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGC
AATCGCACCACTTCCAAGATGTAAAGTTTGGCTAACTTCTCTGCATTTTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAA
TTACCCAAATGGAATCAAACTTACCCATCGTCTTTGGAAGACCAACCACGAAGTCCGTTGCGATTCTCTCCTATTTCCATTCCGGAATGGGCATCCTCTG
AAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGATAGTTTGGACATTTGGCAATAAAGTTCACAATATCACGCTTCATTCTACTCCACCAA
AAGTGTTGCTTTAGGTCACAGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAACCTCTGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.988013
Expected error %
1.0842
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 359 E Value 1e-101 Identity 74.40% Align. Length 771bp (99.48%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 355 E Value 1e-100 Identity 73.60% Align. Length 771bp (99.48%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0013P12
Clone
Clone name
hba-13p12
LE_HBa0013P12
P013P12
Clone type
BAC
Contamination
none
Estimated length
102,288
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found