Clone Read LE_HBa0013P12_SP6_128603

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0013P12_SP6_128603
Primer
SP6
ID from Seq. Facility
LE_HBa_013_P12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
720 trimmed for vector and quality, 827 raw
Genbank Accession
DU050765
Sequence
>LE_HBa0013P12_SP6_128603 (raw untrimmed)
ATAGGGTATCTTTNCCCATGGCTTCCAGCCTTCCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATATTGTAGTCCT
TCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTAAAGACATACTTTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCC
ATATAAATAGTGTCTCCATTGCATTAATGCAAACACTACCGCGGCTAATTCCAAATCATGAGTGGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAA
GCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAAGATGCATCACAATAGATAATAATATTCTTACCTTCCACTGGCAAGG
TGAGAATGGGTGCGGTAGTCAACAAAGTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGAACATTTTGCTTAGTCAAGTTCGT
AAGTTGGGAAGCAATAGAAGAGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATATCTAACACATTAGTAGGTCTTACC
CAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTTGCCAAAACTCACACT
AAGAGAACTTGGTATAAAGCTTTTTGTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCGTGTTCTTTCTTGCTCTTTGAGTATATCAGTATATC
ATCAATAAATATGATTACAAAGAGGGC
>LE_HBa0013P12_SP6_128603 (trimmed for quality and cloning vector)
AGCCTTCCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAAAATAGTGATATTGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGT
CTCAAGTTCAAATCTTTCTGAGTAAAGACATACTTTAGGCTACGATGATCCGTATAGACCTCACACTTAACCCCATATAAATAGTGTCTCCATTGCATTA
ATGCAAACACTACCGCGGCTAATTCCAAATCATGAGTGGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTG
CATTAGCACTGCACCCAAACCCGAATAAGATGCATCACAATAGATAATAATATTCTTACCTTCCACTGGCAAGGTGAGAATGGGTGCGGTAGTCAACAAA
GTCTTGAGCTTCTGAAAGCTTTCCTCACACTCATCCGACCATACAAATGGAACATTTTGCTTAGTCAAGTTCGTAAGTTGGGAAGCAATAGAAGAGAATC
CCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATATCTAACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGA
AGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTTGCCAAAACTCACACTAAGAGAACTTGGTATAAAGCTTTTTG
TCCCTCAACATTTCCAATAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971645
Expected error %
0.0566
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 349 E Value 4e-95 Identity 22.80% Align. Length 719bp (99.86%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 345 E Value 7e-94 Identity 23.00% Align. Length 707bp (98.19%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0013P12
Clone
Clone name
hba-13p12
LE_HBa0013P12
P013P12
Clone type
BAC
Contamination
none
Estimated length
102,288
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found