Clone Read LE_HBa0175K09_T7_124271

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0175K09_T7_124271
Primer
T7
ID from Seq. Facility
LE_HBa_175_K09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
441 trimmed for vector and quality, 815 raw
Genbank Accession
DU053732
Sequence
>LE_HBa0175K09_T7_124271 (raw untrimmed)
ATTGAAAATAGGATAAACTATGATTCGATTATGAGCTCATGTCTTGACTCTACCAGAGGGTTCAGATGGTTATGTGATCTATTGTGATGCATCTAGAGTT
GGCCTAGGTTGTGTGTTGATAAAGCGAGGTAAGGTAATAGCTTATGCCTCTAGACAACTTAAGGTTCATGAGAAGAACTATCCAATGCATGATCTCGAGC
ATGCAGCAGTGGTGTTTGCACTCAAGATCTGGAGACACTACTTGTATGAAGTTCACGTAGATTTGTTCAATGACCATAAGAGCCATCAATATTTGTTCAC
GCAGAAAGAGTTGAATTTTTACCAGAGGAGATGGCTAGAGTTCCTTAAGGATTATGATATGAGCGTGCATTATCATCCGGCTAAGGTTAATGTAGTAACA
GATGTTCTTTGTAGATTATCTATGGGTAGTGTAGCCCATGTTGAGGACGAAAAGAAGGAGCTAGTGAAGGATGTTCACAGGCTTGCTCGCTTATGAGTTC
TCCTTATAAGCATATATGACAATGGTGTAATAGTTTAGAATGGTGCAGATTCATTCTTTTGCTATTGTGAATTAATGAAATACTAGATACTTTGACCTTA
TCTTTCTTTATCTTTTGGTTTCTGTCCCATATTTTCCTTATTTAACTTTTTTACTACTATACTGAAATTGTGGTTGTTTTCTTTAACACTTTGATTCGTT
CCTCTCTCTCGCTGCTTTAGTTATATCTTCTCATTCTATTCCACTTTCTTATATTTCTTTCTTTTTTCTTTTTTTGTTATTATTATTGCCATCCAGTCTA
TATCTGACATATCTT
>LE_HBa0175K09_T7_124271 (trimmed for quality and cloning vector)
AGCTCATGTCTTGACTCTACCAGAGGGTTCAGATGGTTATGTGATCTATTGTGATGCATCTAGAGTTGGCCTAGGTTGTGTGTTGATAAAGCGAGGTAAG
GTAATAGCTTATGCCTCTAGACAACTTAAGGTTCATGAGAAGAACTATCCAATGCATGATCTCGAGCATGCAGCAGTGGTGTTTGCACTCAAGATCTGGA
GACACTACTTGTATGAAGTTCACGTAGATTTGTTCAATGACCATAAGAGCCATCAATATTTGTTCACGCAGAAAGAGTTGAATTTTTACCAGAGGAGATG
GCTAGAGTTCCTTAAGGATTATGATATGAGCGTGCATTATCATCCGGCTAAGGTTAATGTAGTAACAGATGTTCTTTGTAGATTATCTATGGGTAGTGTA
GCCCATGTTGAGGACGAAAAGAAGGAGCTAGTGAAGGATGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953177
Expected error %
0.1856
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 231 E Value 4e-60 Identity 24.70% Align. Length 437bp (99.09%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 229 E Value 2e-59 Identity 24.40% Align. Length 437bp (99.09%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0175K09
Clone
Clone name
hba-175k9
LE_HBa0175K09
P175K09
Clone type
BAC
Contamination
none
Estimated length
108,482
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found