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Clone Read LE_HBa0168O11_T7_123985

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0168O11_T7_123985
Primer
T7
ID from Seq. Facility
LE_HBa_168_O11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
757 trimmed for vector and quality, 822 raw
Genbank Accession
DU053504
Sequence
>LE_HBa0168O11_T7_123985 (raw untrimmed)
GCCGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAGAAGCAGGTATGATTTTTGCAGATGTATGCATTTGAGATAAGCTAAGAC
TTTCACCCTTCCAAATATCCAGAACATAATGAGGAGATAGAAACTGGATATAACTTCACATATGAACTATTCGAAAAGTGGGATTACCGTGAGTTGAACT
CTATTTCCTAGTAAAACATCAGATGTAAAATCTCTATCGGTTGAACTGGCTGCAACTGTGATCATCCAAGGAGCTAAATTTGTGGCTGAACCAGAGGTTC
CTTCATTTCCAACGGAGGCCACTACAAGTATCCCACGGCTAACAGCATGAAATGACCCCACAGAAATTGCATCACTAAAATAATCTCCTTGGGGAGCATC
TGGGCCCAAAGATATAGAAATGACATGAACCCCATCTCTAATTGCATCATCAAATGCAGCCAACAAATCAACATCATAGCAACCAGAACTCCAGCAGGTT
TTGTACACTGCTATCCTGGCCATTGGGGCACCACCTCTGGCTCCTCCAGATGCCAAACCTTTGTAATTCATATCAGCTACATAACGCCCAGCAGCAGTTG
AAGCTGTATGACTTCCATGACCAGAACTGTCCCTGGCAGACTTGAACATGATCTTTTCATCTTCTTCAGCTGCATAGCCACTCATATAATATCTTGCCCC
AATTATTTTCCTATACAAGACAAAATTCTTATTAGACTTGTCATCTATAAAACAATACATTAAACTGCAAGAAATGGGTTGAAATTTAAAAGAAAACCTG
TTGCATTTTTGAGGCATTGAAT
>LE_HBa0168O11_T7_123985 (trimmed for quality and cloning vector)
AGCTTCAGAAGCAGGTATGATTTTTGCAGATGTATGCATTTGAGATAAGCTAAGACTTTCACCCTTCCAAATATCCAGAACATAATGAGGAGATAGAAAC
TGGATATAACTTCACATATGAACTATTCGAAAAGTGGGATTACCGTGAGTTGAACTCTATTTCCTAGTAAAACATCAGATGTAAAATCTCTATCGGTTGA
ACTGGCTGCAACTGTGATCATCCAAGGAGCTAAATTTGTGGCTGAACCAGAGGTTCCTTCATTTCCAACGGAGGCCACTACAAGTATCCCACGGCTAACA
GCATGAAATGACCCCACAGAAATTGCATCACTAAAATAATCTCCTTGGGGAGCATCTGGGCCCAAAGATATAGAAATGACATGAACCCCATCTCTAATTG
CATCATCAAATGCAGCCAACAAATCAACATCATAGCAACCAGAACTCCAGCAGGTTTTGTACACTGCTATCCTGGCCATTGGGGCACCACCTCTGGCTCC
TCCAGATGCCAAACCTTTGTAATTCATATCAGCTACATAACGCCCAGCAGCAGTTGAAGCTGTATGACTTCCATGACCAGAACTGTCCCTGGCAGACTTG
AACATGATCTTTTCATCTTCTTCAGCTGCATAGCCACTCATATAATATCTTGCCCCAATTATTTTCCTATACAAGACAAAATTCTTATTAGACTTGTCAT
CTATAAAACAATACATTAAACTGCAAGAAATGGGTTGAAATTTAAAAGAAAACCTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.96054
Expected error %
0.4723
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g14240.1 Score 179 E Value 1e-45 Identity 17.20% Align. Length 539bp (71.20%) Frame 1
68416.m01803 subtilase family protein contains similarity to SBT1 GI:1771160 from [Lycopersicon esculentum]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g34980.1 Score 178 E Value 3e-45 Identity 18.00% Align. Length 539bp (71.20%) Frame 1
68417.m04959 subtilase family protein similar to SBT1, a subtilase from tomato plants GI:1771160 from [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC53929.1| Score 315 E Value 5e-90 Identity 88.50% Align. Length 667bp (88.11%) Frame 2
serine protease-like protein [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD35681.1| Score 255 E Value 5e-69 Identity 70.20% Align. Length 691bp (91.28%) Frame 2
putative subtilisin-like serine proteinase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0168O11
Clone
Clone name
hba-168o11
LE_HBa0168O11
P168O11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found