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Clone Read LE_HBa0142D04_T7_122562

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142D04_T7_122562
Primer
T7
ID from Seq. Facility
LE_HBa_142_D04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
461 trimmed for vector and quality, 890 raw
Sequence
>LE_HBa0142D04_T7_122562 (raw untrimmed)
CCCCACCCGGGACCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTTAGTTGTGATCTTCATGCCCTTAAGGGGCCCTTTNCAATTNNNGA
AAACNAGCAACAGACTTTAGAGGAATGTTNTAANTTTTGGGTTTAGGATTTTGGTGAATGTTTGATAATTATAAGTGTGTGTTTTTTGTTTTTAGATGAG
AATGAATTTGAGGAAGTGAATATNGTGAAAGGAAATGATGAATTTTAGTAGAGTAATGATTGAGATGGTGGTGAAAATTGGTGAGAANGTAGATTATGGA
AATATATAATGNTGAATAAATATGTGTATAATTGTAAANTGGGAATTGATTGAGATGAATATGGTTGTTATAAAATAATAAGATAGAGTTGAGTTTGATG
GTGTAAGGAAGTTTGGGAGAAAATTGAAGTGGGATTTATTTTGGTGGGGGGAGAAAATAATAAATTTTTTTGATTTTTTTAAAAAGAATAATATGAGTGT
TTTTTTTTTTTTAATGGGTAATATATATTATGTGTAGTGAGAAGTAGGTNTTTATTGGAAGAGTGTGTGTGGGTGAGTTTTTTGTGTAGAAGTTGAAGAA
TGTTTTTTGNATGTTAGGGTAGATGTGTGGATATATTTGTTTAATTTAATNTGATTGTTTTTATTNGATTTTAATTTGTGATGGGATATATAAAATGTAA
AATAGGATTTTTTATGTTATTAAAAAGATAAGATTATGGAAGTGTTATATGGTATAATATTTGTATAAATTTTGAATTTTTAGATATATGTAGGTATTTA
GGGTTTGGTAGGATTTTGTGTTGGATGTAGTATATTTTGGTATGTTAGTGGTTGTTGTGTANTAAAATAAGTTTTATTATATAGTTTTTT
>LE_HBa0142D04_T7_122562 (trimmed for quality and cloning vector)
AGCTTTTTAGTTGTGATCTTCATGCCCTTAAGGGGCCCTTTNCAATTNNNGAAAACNAGCAACAGACTTTAGAGGAATGTTNTAANTTTTGGGTTTAGGA
TTTTGGTGAATGTTTGATAATTATAAGTGTGTGTTTTTTGTTTTTAGATGAGAATGAATTTGAGGAAGTGAATATNGTGAAAGGAAATGATGAATTTTAG
TAGAGTAATGATTGAGATGGTGGTGAAAATTGGTGAGAANGTAGATTATGGAAATATATAATGNTGAATAAATATGTGTATAATTGTAAANTGGGAATTG
ATTGAGATGAATATGGTTGTTATAAAATAATAAGATAGAGTTGAGTTTGATGGTGTAAGGAAGTTTGGGAGAAAATTGAAGTGGGATTTATTTTGGTGGG
GGGAGAAAATAATAAATTTTTTTGATTTTTTTAAAAAGAATAATATGAGTGTTTTTTTTTT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.898559
Expected error %
10.3696
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142D04
Clone
Clone name
hba-142d4
LE_HBa0142D04
P142D04
Clone type
BAC
Contamination
none
Estimated length
85,067
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found