Clone Read LE_HBa0188N09_T7_113913

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188N09_T7_113913
Primer
T7
ID from Seq. Facility
LE_HBa_188_N09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
615 trimmed for vector and quality, 848 raw
Genbank Accession
DU070041
Sequence
>LE_HBa0188N09_T7_113913 (raw untrimmed)
TCGGTTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTCCAACAATCCCTTGGCATTCATTCTACACTCTTACAACACACATATTTTA
AAATAAAATTCAACTAACAAACAACAACATAGCCCCACAAGTTGAATCTGGGGAGTGTAGAATATACGGACACCTTACCCCTACCTTGGTAGGTAGCATA
CTCAGTACGTTCCCATAAGTGGAGTCTAGGAAGGGTAGGGGTAGAAAGACTATTTCCGAGAATGAAATTCAACAAAACAAGAAAAGAGGAAATCAAGGAG
AGTTTTTTTTTTTTTTGTTACCTTGGAAGATCACAATGATAAGGTTGCCATCTCCAATAATGATATTTTGAGTCTTTTCTTCCAAATTTGTGGCAAGCAA
AATCGTCAGGCATGAAAGAACATTGTTTTTCTTTGTACAAAGGATATGACACATTATCAAAAATCCATCTTCCAGAAAACAAATCACATTTTGGAGATGA
ATTTTTCCTTGTAGACTTATTAATTGCCAGAAAATTAACACCATCACTATTATCTCCTATAAGATAAAAAGACACAAAAAGAAAGAACAAGAGGAGGAAT
CCTAAAACAGAATGCAAATTATATTGAATTATCCATGAATTATGCGCTAATTTTTCTTGCCATATTCTTCTCTCAGATAACCGTCTTAGCTTTGAATTTA
TCGTCTTATAAGAGATCACCTTTATAATACAGAGGGGTAATAAGCTGCTCTAGGGTAATTGGAGCTTGTTTAAATTTAAAAGTTATTTTGCTTTGGGTAT
CTCTTACTTTTCTCTTGTTTTGTGGAACGAACTTATTGTAATTTAATN
>LE_HBa0188N09_T7_113913 (trimmed for quality and cloning vector)
AGCTTCTCCAACAATCCCTTGGCATTCATTCTACACTCTTACAACACACATATTTTAAAATAAAATTCAACTAACAAACAACAACATAGCCCCACAAGTT
GAATCTGGGGAGTGTAGAATATACGGACACCTTACCCCTACCTTGGTAGGTAGCATACTCAGTACGTTCCCATAAGTGGAGTCTAGGAAGGGTAGGGGTA
GAAAGACTATTTCCGAGAATGAAATTCAACAAAACAAGAAAAGAGGAAATCAAGGAGAGTTTTTTTTTTTTTTGTTACCTTGGAAGATCACAATGATAAG
GTTGCCATCTCCAATAATGATATTTTGAGTCTTTTCTTCCAAATTTGTGGCAAGCAAAATCGTCAGGCATGAAAGAACATTGTTTTTCTTTGTACAAAGG
ATATGACACATTATCAAAAATCCATCTTCCAGAAAACAAATCACATTTTGGAGATGAATTTTTCCTTGTAGACTTATTAATTGCCAGAAAATTAACACCA
TCACTATTATCTCCTATAAGATAAAAAGACACAAAAAGAAAGAACAAGAGGAGGAATCCTAAAACAGAATGCAAATTATATTGAATTATCCATGAATTAT
GCGCTAATTTTTCTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.937613
Expected error %
0.5137
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g38320.1 Score 103 E Value 1e-22 Identity 21.90% Align. Length 182bp (29.59%) Frame 3
68415.m04708 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g01620.2 Score 90 E Value 1e-18 Identity 21.10% Align. Length 170bp (27.64%) Frame 3
68418.m00078 expressed protein several hypothetical proteins - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02513 Score 103 E Value 4e-21 Identity 21.90% Align. Length 182bp (29.59%) Frame 3
hypothetical protein At2g38320 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK44125.1| Score 103 E Value 4e-21 Identity 21.90% Align. Length 182bp (29.59%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAC28772.2| expressed protein [Arabidopsis thaliana] ref|NP_565888.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188N09
Clone
Clone name
hba-188n9
LE_HBa0188N09
C10HBa0188N09
P188N09
Clone type
BAC
Contamination
none
Estimated length
49,418
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found