Clone Read LE_HBa0188N09_SP6_113912

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188N09_SP6_113912
Primer
SP6
ID from Seq. Facility
LE_HBa_188_N09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
425 trimmed for vector and quality, 854 raw
Genbank Accession
DU070040
Sequence
>LE_HBa0188N09_SP6_113912 (raw untrimmed)
GGCGGGTTTTTTCTATTTATTATTATGATCTCTCCAGTTGGAGGTGTTGAAGATCCTATGCTAAGTGACATTCACAGTCATCAACAATTAGTTGGGAAAC
TAATCTATGTGACAATCACCAGGCCTGACATATGTTTTGCAGTTCAAGTTCTCAGTCAGTTCATGCAACATCCAAAAAGGTCACATTGGGATGCAGCATT
GAGAGTGCTCAGATACCTCAAACAAGCACCTGGGCAAGGAGTGTTACTGCAAGAGATTTCATCACAAGCTTGACAGCATACTGTGACTCAGATTGGGCAG
CTTGTCCTAATACCAGGTAGATCAATGACAGGATATGTAATTCAACTTGTAAGTTCCTTGATCTCATGGAAGTCAAAGAAGCAGCATACCATCAGTAGAA
GCTCACCTGAGGCTGAATACAGAAGCATGGCAGGTACAGTAGCAGAGATTATTTGGTTGACTGGATTATTAAATGATCTAAGGGTAGACATTACTACACC
TGTTACAATATGTTGTGATAGCAAGGCCACTATACAGATTGCTACCAATCCAATCTTTCTTGAGAGAACCAAACATATAGAGATTGTATGTTTTTTTTAT
AAAGTAGAAGAATAAAGAATGCTTGATCAAACCTATATCTATGGTAAATAAATGTCTCCTTGTATCTCTACTTTTAATTAAGTCTTCCGACTACTAACTC
CTCCAGATTTTCTCTCCTGCCCGGTGATCTATCACAAAATTCTATACCACCCAAATTTCATTGTAGTAACCCAACCCCTATCTCGCACTTGATAATCCAT
CTGCCTTCTCACTAAACCTTTCTCATCACGCTCTTGTCGTGATCTGGTCCGTTT
>LE_HBa0188N09_SP6_113912 (trimmed for quality and cloning vector)
AGGTGTTGAAGATCCTATGCTAAGTGACATTCACAGTCATCAACAATTAGTTGGGAAACTAATCTATGTGACAATCACCAGGCCTGACATATGTTTTGCA
GTTCAAGTTCTCAGTCAGTTCATGCAACATCCAAAAAGGTCACATTGGGATGCAGCATTGAGAGTGCTCAGATACCTCAAACAAGCACCTGGGCAAGGAG
TGTTACTGCAAGAGATTTCATCACAAGCTTGACAGCATACTGTGACTCAGATTGGGCAGCTTGTCCTAATACCAGGTAGATCAATGACAGGATATGTAAT
TCAACTTGTAAGTTCCTTGATCTCATGGAAGTCAAAGAAGCAGCATACCATCAGTAGAAGCTCACCTGAGGCTGAATACAGAAGCATGGCAGGTACAGTA
GCAGAGATTATTTGGTTGACTGGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.947896
Expected error %
1.0165
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 102 E Value 8e-23 Identity 13.70% Align. Length 392bp (92.24%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 149 E Value 3e-35 Identity 18.60% Align. Length 413bp (97.18%) Frame 3
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79159.1| Score 138 E Value 5e-32 Identity 16.50% Align. Length 404bp (95.06%) Frame 3
LTR retrotransposon like protein [Arabidopsis thaliana] emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana] pir||T49111 hypothetical retrovirus-related pol polyprotein AT4g22040 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188N09
Clone
Clone name
hba-188n9
LE_HBa0188N09
C10HBa0188N09
P188N09
Clone type
BAC
Contamination
none
Estimated length
49,418
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found