Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0190C17_T7_107265

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190C17_T7_107265
Primer
T7
ID from Seq. Facility
LE_HBa_190_C17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1998 raw
Sequence
>LE_HBa0190C17_T7_107265 (raw untrimmed)
CGACACTAGAGTCTATTATGTTGTATGTATGNTANTGTCANAGCGGCGATTCTACGCTTTGCATCTCTNNCTTATTAGACCTAACAATATAGCGTACGCT
TCAGCGGTACTTCGNATCACTCCTCTCGTAGAGTCTCGCGTGACTTATCGGCGCTGGCAGGTCGCGCNGCGCTAGATGTGCGCGACTGCACACTAGCACT
ACACAACACATGNGCGAGACTGANATCATACANGCAACACTCTTCTGTTTCAGAGAGTNANTGTGCATNGTANCTCGTATAGNAAGGAGTCGCNTGTGAT
TAACNCGAACCTAATACTGACTGAAGAGACATGCGCAGCGAGCGCGCTACTAANACTGAGTGAGTGAATGAGATGAATTGACATATGATCTATGAATNAT
GTGTTGAACTTAGCCACGCGAGCTGCGCTACGCGACGCTGCCACTCGACAGGCCGATNTTCTACTACAAGCTCACACTCATCACTGTGTGAAGAGACATC
GTACATACNAGCGCTCCGCCGAGTAGACAGTCAGACTACGNCATGGCGCGGACTCACTTGACGCTAGTCTTACCTATGTATGTCACGCTACAGCGTACTC
CNCCTCACGCAGCCACCNTGGCCTGACCCTCGAGCAGAGCGCCAGTTGGCCATGTTCGAGCGCTAGTACGNCAATAGCACGTGGTGGNCGTAGGAAGTGG
AATGATCGTGATCTATAGGGAGCTTGTCNGNCTGCTCAGTGCTGCTACACATAAGTCGGCGGTGCATCGCTGAGTAAGATCCNGACAAGCGGATACGTAC
ACTTGCCATATACACTGCAACGATACTCTAAGACNATAGTACAGTACGTATGCNAGATGTGCTGTNCATACATTCTGCACGAGTACAGANGACTATGACA
CACAGAGAAGGAGACGACAGAGTANTGGTGATTGATGACTGAGCGTCTGACANAGACAGTGATGAGTGACACGCCGTTGACAGTGACTGAGTATCGTCAC
GTACGACTGACACTAGAACGTACACGACACGCATCGCGCGCGCAGCGCCGCTCGACATAGCTNCTGAGCTGACAAACACATGTGTCTCTATATAGNCGAG
TGTCGAGAGGAGATTCACGCNCATGTGTCGATGGTGCAGTGAGTACGGACGCTCAGTGCGGTGGAACGNCTCGTGCGCGACAGNGTAGCTAGTGGGNCGC
GGAGACGCATNGACAGANGTGTGNCAGCGTGNATNGACGACNATGTGAGAAGTAGTACGGTGACGTCGACGTAGCNGCTACNANGAACTGTCTGCGACCA
TATACTATNGNAGGATNCAACTGCAGTACATGCACACTATCGTCNCACACCGACTGAACCGATAAANTAGATGNCGACGCGCATGTACTACACTGGGTGC
TCAGACAGTACGGATCTAGTCGCGNGANTGACTNCAGTGANGCNTGCGANGCGACATGCACAGATACGTNGCGACTGCTGATGCGNGCCTGACAGNNCAG
CNGATAGTGTAGCGATGNGTCGCATGGCATGACTACANCNGNTACACTGACGGCGCGTACGGGANCNCTGTNCANANTACTCGTATGGACGTGACGANCT
TGACATAGTGATGCCNTGGNAGCTNAGTGTGGNCGTACTGAGCGTCGCANTGTAGNATGATACACNAGAGTCGCTGCCCNGATGAGTNACNGCACGGANG
ATATAGGTGCACTCAACGCTNAGTATCGCACCTAAATCGTGCTGCNGTAGNANCGNCNCNCAGTAGATGTGGTANCGTGCAGTCGATNTNGATGTGACTC
TGCTATATAAGTGTGACTGCNCNTNCAGANGCNCATGTACTCATNTACACAATNGCTNCNCATAGCACAGTCAGACCTACTTGATGTATAANGNGCTGAT
ATAAANACACAGCTAGTGCTAGTGATAGGNCNCTACATTNGACCNTCGCNCACNTAGCTTATGGATAGACGAGCTCATCGCTAGCGACATCACTCTTG
>LE_HBa0190C17_T7_107265 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190C17
Clone
Clone name
hba-190c17
LE_HBa0190C17
P190C17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found