Clone Read LE_HBa0189A15_T7_106397

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189A15_T7_106397
Primer
T7
ID from Seq. Facility
LE_HBa_189_A15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
492 trimmed for vector and quality, 831 raw
Genbank Accession
DU092239
Sequence
>LE_HBa0189A15_T7_106397 (raw untrimmed)
TCCGGTACCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCCAAAGGGGGGTAAACTTACCTGGGGTAAAATGTTTCTTTTGTCAATTTTC
TCTTGATACTGAAAAATATGGTGCGGAATTTCTAAATTAAATATATCCGTAAAATTTTTAACTTGTCTAAGTTGATAGTTGTCTTACTTCTTTTGATTTT
TAAGTATCTTGTCTGTATTGAATGGAAGTGTGTTCCCGTACTCCCGCTACAGGCATACCGGACTTTGCAGAAGTCTATAGCTTTATTGGGAGTGTGTTTG
ATCCAGACACTAGAGGTCATGTACAGAAGCTGAAGGAGATGGACCCTATTAATTTCGAAACTGTGAGTTTTCGACCTATGTAAATTAAACATTTTACATT
TGCTTCATATATTATTGTAGTACTGTTCTGTTACTATATGCGTCTCCTTTCCCCTCTCACTGTCCTTATTTAACGTAATTTAAATATGTGGATTTGCTAA
TCGTGTTCGTGTGTTTCCTCTGGTTAGCAGGTTTTTGATGTTGACTTGTGAATTTTACTCTGTACTCGTTCAATCACGGACTATTCACTATTGTTGGATT
TGGTTCAATTGTTTTATATTTTTAAATAGTTGTTTTCTTATATTGTTCTGATATTATATACATGATAATTTTTATGTTTAATATATGTATATTATATTAC
ATTCGGTGTGACGTAAGATACAGTGTTGATGAATATTTTATACTTCTTACTTACTTATTCTATTTTATATTTTATGCTTGTTCTTTGATTCTTTTTCATT
TATCTTCTATTTCTTTTTTTTTATTCTTTTA
>LE_HBa0189A15_T7_106397 (trimmed for quality and cloning vector)
AGCTTGCCAAAGGGGGGTAAACTTACCTGGGGTAAAATGTTTCTTTTGTCAATTTTCTCTTGATACTGAAAAATATGGTGCGGAATTTCTAAATTAAATA
TATCCGTAAAATTTTTAACTTGTCTAAGTTGATAGTTGTCTTACTTCTTTTGATTTTTAAGTATCTTGTCTGTATTGAATGGAAGTGTGTTCCCGTACTC
CCGCTACAGGCATACCGGACTTTGCAGAAGTCTATAGCTTTATTGGGAGTGTGTTTGATCCAGACACTAGAGGTCATGTACAGAAGCTGAAGGAGATGGA
CCCTATTAATTTCGAAACTGTGAGTTTTCGACCTATGTAAATTAAACATTTTACATTTGCTTCATATATTATTGTAGTACTGTTCTGTTACTATATGCGT
CTCCTTTCCCCTCTCACTGTCCTTATTTAACGTAATTTAAATATGTGGATTTGCTAATCGTGTTCGTGTGTTTCCTCTGGTTAGCAGGTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.954494
Expected error %
0.574252
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g09600.1 Score 78 E Value 2e-15 Identity 29.80% Align. Length 113bp (22.97%) Frame 3
68416.m01140 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g02840.2 Score 72 E Value 2e-13 Identity 27.20% Align. Length 113bp (22.97%) Frame 3
68418.m00227 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM14056.1| Score 78 E Value 8e-14 Identity 29.80% Align. Length 113bp (22.97%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAM67502.1| unknown protein [Arabidopsis thaliana] ref|NP_187571.2| myb family transcription factor [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAI77454.1| Score 78 E Value 8e-14 Identity 29.80% Align. Length 113bp (22.97%) Frame 3
myb transcription factor LHY-CCA1-like5 [Arabidopsis thaliana] gb|AAS58518.1| MYB transcription factor [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189A15
Clone
Clone name
hba-189a15
LE_HBa0189A15
P189A15
Clone type
BAC
Contamination
none
Estimated length
105,713
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found