Clone Read LE_HBa0189A15_SP6_106396

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0189A15_SP6_106396
Primer
SP6
ID from Seq. Facility
LE_HBa_189_A15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 992 raw
Sequence
>LE_HBa0189A15_SP6_106396 (raw untrimmed)
AAAAAAAAGCCCCACGCGACCCGGACTCGCAACAGAGGCGTAAAGGAACCTTGGCCCCGGGAGGAGGTAATGTCCAGATCCTTTTATCCCCTTATAGAGT
GCCCTATGTGCAGAGTGATAAGATGGTCGTCTATTTCGAAGACTTTAGGCGCAGGAGACCGCGATGTCAAAGCTACTTGTCCACAGAATACCTGCGGCTG
TTCTTTGTCAAGAGTTGCACAAAGCTATTCCTGGCGACTTTACTGGGGAAGGTAAGGTTAGGAGAATCTTATGCTTTTCTCATCTCATACCAATGA
TGAA
TGACATAAGAATCACATGCCTTACTGAACCCGTGTCAAACTGGCATGACAGGGGTATTCATGCTTTGTGCTCCATCCCCAAAAACAACATTATTTGCAAG
AAGCTACTCATGTACATTCCACACGTTAACCGTTAACCCCACGTGACACCGTGCTTGTAAACGAGCGCGGGTGACATGAATCCTTGCCTATAAGAGCACA
AAGCCCGAGCAACAACCCGATGCAAGAAGAAAGACAATCTTGTTAAAGGCTAAAACATGAAAAAACACTTGCCCTGCCAGGTGACACCGGAACGCCCAGC
CCCATAGAAGAACCGGACCAAAAAAATACGCATTAAGTAGGCGGAAAAGACGAACCAAAAACAAAGGGTACGCCCCCACACGGAATCTTGCAAAAGCATG
ATGGACTGATCAACCTGCCGCCGCCCACCCCCAACACATCCAAGTTAACAAACCCCCCCAACCCCCCCCTCAACTACACCAACAAAAAGACCCGGCCGCG
ATACAAAAACGCCCCACCCCCAGAAAAAACCACCTGTGACATAGTTCCAAACCCACCACCCAGAAGCCAGAGCTTCACGAGAGGACGTGAGGGCAGCCAA
GAGCCGCCCCGCCCCACGCCCCCCCGCGCGAGCCACACCCACACACAGCACAGCCAATCAGTCATCCTACCAACAAAAAAAAAAACAACCCG
>LE_HBa0189A15_SP6_106396 (trimmed for quality and cloning vector)
TGAATGACA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.203157
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0189A15
Clone
Clone name
hba-189a15
LE_HBa0189A15
P189A15
Clone type
BAC
Contamination
none
Estimated length
105,713
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found