Clone Read LE_HBa0173J02_SP6_105266

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0173J02_SP6_105266
Primer
SP6
ID from Seq. Facility
LE_HBa_173_J02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1870 raw
Sequence
>LE_HBa0173J02_SP6_105266 (raw untrimmed)
TTGAAGTCATACGCTCTCGAAAGAGANACAGGAGGTCAGAGCGTCTATGATATATATACACATATTATANTACTTTGTAGCGGACGACTGCGAGGAGTCT
AAATCTGTGTACAGTGGTAGACGCTAGGGAAGTGGCGCATAGCTTTCTGGNCTAAACGTAGGTCACATANCGGAGGGCGCCGCGGCTGACTCTGCGCTGC
TGCTCCGACGTGTAGAGACGAGGANAGCTNACTCGACGAGACGGCAGGAACGGGTANCNACATANCANCACACCTATGCCTGTGCTTGACTCCCGAGACT
CATCGCATAGAGAAGATGCACGACCTGGTGCTCGACATCNACTTACGCTGCNGTAANTGCGCCCTCGACGACANGACTTGATAGAGCGACGACGCGTANA
TTGACTGCAGCAACCCGCGCTGATGTAGANGACTCANANTTACGTATTACATATGAACAACATAACGACGCTGAGACGGTGGNATTGCTGCNACTTAACA
TACGATGACTGTGGTGGGTGCTATGTGTGCCNGCCGTATAGTCGTCGATGNATGTGAATGNGCTGAGAGATATATATGAATNAATAGAACTATGCTTGCA
TCTGATATATGTTGCGACACAGACATATCACCAATACAACACGTATCGATACATACATACTCACGCTACACACGTACATAATAATACGCATGAGTACTCG
CTGGTATNTACACGATAATTGTCATAGACTCACGGATACGTCCTGTACAGAGATGCTGNTGACACACTGCGATACGTGTCGAAGCGGAANCACGCGCGTC
TCTCGGTGTGATGCCTAGCGGAGTCTCGCTCGCNGTGCTCGAGAGACGCGCTTACTGTCACTGTCACGATATCCGTCTCCTGAACCGCTACTTCGTATAC
TTCGGATCANCTGAATANCTCACTGACTGTTGTCTATGCTACTGATCTACACANTCTGNGCTACTCCGCGAGATACTCATCNGATNGTCGATTGAGNTNT
GTGCCGACCTCTCAGTACGCGCATCGGGAGCTGCACACTTACAGTGCAGTCTGAGTATCGCGACGCATGATGATGTATGCTGACGATNTGGACTTTANCG
GCTGTTTGCGCACGCTACGTCGTGTAGCGCTGCTCTGCTGCGCCTTATCGAGACTGCGACATACGACCTCGNTCNCNCACGCGNGATATCGCGACGCCTC
TGACTGGTACGGACACTATCGACTNCNTNAATGAGCTACGCAATANCGCTACTGTCATTGATGACACAATCTGATTCGCTGCNGATCGATATGAACTATG
ATGTTACACGCTGACTGTTGACTGGTGACACGGATATGCTNCGGAAGATACGCNACGCTNANCACACTCTTGCATGCTGTCACACTACTGATGCTACAGA
NACANCTTGACTGATGCATATACTGCGCCGTATTNCTGTGCATATCGTATGCACNACGCACANAANAGCANANATCTTGCTGCATAGCNGNCGACATACA
TACGTNGCTCGCTTCANTCGACGCACANAGCGNGCAGACGCNTGCTGTACGGCTGCCACTGACGACAGTACGCACATTCGACTNGAGTGTANCTACGAAA
NAACTGAATACNGACTTGGCTCGTACGCTATNATTGACGCTGCNGNCGCGTGTNCATCGCGCTACGATTGTCTATACATTGCTATGNGTACTGAGTATGC
TGTCGCACTTGCTGATGTATACCCACTATGACCATCAACAGCATCGTAATTGCCGATATATTGCTGATGACATCAGCAAGACAAAATACGCCGATAACAT
GATATACTGTCTANTGCCTGTGCGNGATCACACTTGATGACCTAATATTACTGTCCTATNATGTGTAGTG
>LE_HBa0173J02_SP6_105266 (trimmed for quality and cloning vector)
ATA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.64906
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0173J02
Clone
Clone name
hba-173j2
LE_HBa0173J02
P173J02
Clone type
BAC
Contamination
none
Estimated length
83,536
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found