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Clone Read LE_HBa0173F03_T7_105077

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0173F03_T7_105077
Primer
T7
ID from Seq. Facility
LE_HBa_173_F03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
708 trimmed for vector and quality, 783 raw
Sequence
>LE_HBa0173F03_T7_105077 (raw untrimmed)
AGCCTGGATCCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAACAGTGTTATATTCTCTGCCTTTTATAAAGCAATCTAGCACGAGATAT
GAGTGACTATCACCTTAGACCAGGAACTTCAGTCCTGGTGAAACAATGTTTAGGTATTGCGTACCACGACACAAGATCAAATCCAATTTGGCAAGAAGGG
GAGCCTTGATAACACAAAACGATGTGGCTGGCACAAAGGTTGTCCCTTTGAGATGAAGGGCAATAAGATTCTGAAAACCAATAAAGGGATTGGGTGGTTT
GAAGACACAGTTAGAAAGTTCCAAATATGTCAAGGTTGAACAATTAAAAATAGATAAGGGCAGAGTATAGGTATCATCATTTGAAGTGCGAAGAGTTAGC
ATCTTGACTCCATTTCTAGTGACATAAAGAATCCATCTATCGATAATTGCATATGAAGATTTTGCAGTAAAAACTCCTTTCGTGTCAAGAACAAACTTCA
CACTGTCCCCCATATGCAGTAACAGAATACAATTTACCGCTTCTGTGAAGTCGGATTTGAGCTTTCCTATAAAATTTTGACGGAAGCCGTTATCCAGCAC
CAGCTCTGGAAAAGTCGCCCAAATATATCTCCACTTTCGAGACAAAATACTAGTTCTTGCTGCATCTTTAACTGGTATGAACTCAAGGATATGATCAATA
ACATTTTTTGGTCAACCACTGATTCTATCTTCACTATCACCTTCAATGACACATCCTGTTTCATCTGTTCAAAAAATATGGAG
>LE_HBa0173F03_T7_105077 (trimmed for quality and cloning vector)
AGCTTTAACAGTGTTATATTCTCTGCCTTTTATAAAGCAATCTAGCACGAGATATGAGTGACTATCACCTTAGACCAGGAACTTCAGTCCTGGTGAAACA
ATGTTTAGGTATTGCGTACCACGACACAAGATCAAATCCAATTTGGCAAGAAGGGGAGCCTTGATAACACAAAACGATGTGGCTGGCACAAAGGTTGTCC
CTTTGAGATGAAGGGCAATAAGATTCTGAAAACCAATAAAGGGATTGGGTGGTTTGAAGACACAGTTAGAAAGTTCCAAATATGTCAAGGTTGAACAATT
AAAAATAGATAAGGGCAGAGTATAGGTATCATCATTTGAAGTGCGAAGAGTTAGCATCTTGACTCCATTTCTAGTGACATAAAGAATCCATCTATCGATA
ATTGCATATGAAGATTTTGCAGTAAAAACTCCTTTCGTGTCAAGAACAAACTTCACACTGTCCCCCATATGCAGTAACAGAATACAATTTACCGCTTCTG
TGAAGTCGGATTTGAGCTTTCCTATAAAATTTTGACGGAAGCCGTTATCCAGCACCAGCTCTGGAAAAGTCGCCCAAATATATCTCCACTTTCGAGACAA
AATACTAGTTCTTGCTGCATCTTTAACTGGTATGAACTCAAGGATATGATCAATAACATTTTTTGGTCAACCACTGATTCTATCTTCACTATCACCTTCA
ATGACACA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.970285
Expected error %
0.730783
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g13570.1 Score 119 E Value 2e-27 Identity 12.40% Align. Length 620bp (87.57%) Frame 2
68414.m01591 F-box family protein contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g56420.2 Score 81 E Value 6e-16 Identity 9.70% Align. Length 608bp (85.88%) Frame 2
68418.m07043 F-box family protein contains F-box domain Pfam:PF00646
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC43076.2| Score 119 E Value 1e-25 Identity 12.40% Align. Length 620bp (87.57%) Frame 2
unknown protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_172814.1| Score 119 E Value 1e-25 Identity 12.40% Align. Length 620bp (87.57%) Frame 2
F-box family protein [Arabidopsis thaliana] pir||G86268 hypothetical protein F13B4.6 - Arabidopsis thaliana gb|AAF99824.1| Unknown protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0173F03
Clone
Clone name
hba-173f3
LE_HBa0173F03
P173F03
Clone type
BAC
Contamination
none
Estimated length
88,928
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found