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Clone Read LE_HBa0173F03_SP6_105076

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0173F03_SP6_105076
Primer
SP6
ID from Seq. Facility
LE_HBa_173_F03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
683 trimmed for vector and quality, 826 raw
Sequence
>LE_HBa0173F03_SP6_105076 (raw untrimmed)
CCTGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAACAGTGTTATATTCTTGCAGCTCATAAAGCAATCTAGCACGAGATATGAG
TGACTATCACGAAAGACCAGGAACTTCAGTCCTGGTGAAACAATGTTTAGGTATTGCGTACCACGACACAAGATCAAATCCAATTTGGCAAGAAGGGGAG
CCTTGATAACACAAAACGATGTGGCTGGCACAAAGGTTGTCCCTTTGAGATGAAGGGCAATAAGATTCTGAAAACCAATAAAGGGATTGGGTGGTTTGAA
GACACAGTTAGAAAGTTCCAAATATGTCAAGGTTGAACAATTAAAAATAGATAAGGGCAGAGTATAGGTATCATCATTTGAAGTGCGAAGAGTTAGCATC
TTGACTCCATTTCTAGTGACATAAAGAATCCATCTATCGATAATTGCATATGAAGATTTTGCAGTAAAAACTCCTTTCGTGTCAAGAACAAACTTCACAA
TGTCCCCCATATGCAGTAACAGAATACAATTTACCGCTTCTGTGAAGTCGGATTTGAGCTTTCCTATAAAATTTTGACGGAAGCCGTTATCCAGCACCAG
CTCTGGAAAAGTCGCCCAAATATATCTCCACTTTCGAGACAAAATACTAGTTCTTGCTGCATCTTTAACTGGTATGAACTCAAGGATATGATCAACAACA
TTTTTTGGTAAACCCACTGATTCTATCTTCACTATCCCCTTCAATGACACACCTTGTTTCATCTGGTTAAAAGAATATGGAAAAAAAAAACAATCAAAAT
TAATCCCCCTAATTTTTACGGGGGGT
>LE_HBa0173F03_SP6_105076 (trimmed for quality and cloning vector)
AGCTTTAACAGTGTTATATTCTTGCAGCTCATAAAGCAATCTAGCACGAGATATGAGTGACTATCACGAAAGACCAGGAACTTCAGTCCTGGTGAAACAA
TGTTTAGGTATTGCGTACCACGACACAAGATCAAATCCAATTTGGCAAGAAGGGGAGCCTTGATAACACAAAACGATGTGGCTGGCACAAAGGTTGTCCC
TTTGAGATGAAGGGCAATAAGATTCTGAAAACCAATAAAGGGATTGGGTGGTTTGAAGACACAGTTAGAAAGTTCCAAATATGTCAAGGTTGAACAATTA
AAAATAGATAAGGGCAGAGTATAGGTATCATCATTTGAAGTGCGAAGAGTTAGCATCTTGACTCCATTTCTAGTGACATAAAGAATCCATCTATCGATAA
TTGCATATGAAGATTTTGCAGTAAAAACTCCTTTCGTGTCAAGAACAAACTTCACAATGTCCCCCATATGCAGTAACAGAATACAATTTACCGCTTCTGT
GAAGTCGGATTTGAGCTTTCCTATAAAATTTTGACGGAAGCCGTTATCCAGCACCAGCTCTGGAAAAGTCGCCCAAATATATCTCCACTTTCGAGACAAA
ATACTAGTTCTTGCTGCATCTTTAACTGGTATGAACTCAAGGATATGATCAACAACATTTTTTGGTAAACCCACTGATTCTAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967945
Expected error %
0.681456
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g13570.1 Score 115 E Value 2e-26 Identity 12.30% Align. Length 593bp (86.82%) Frame 1
68414.m01591 F-box family protein contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g56420.2 Score 77 E Value 7e-15 Identity 9.50% Align. Length 608bp (89.02%) Frame 1
68418.m07043 F-box family protein contains F-box domain Pfam:PF00646
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC43076.2| Score 115 E Value 8e-25 Identity 12.30% Align. Length 593bp (86.82%) Frame 1
unknown protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_172814.1| Score 115 E Value 8e-25 Identity 12.30% Align. Length 593bp (86.82%) Frame 1
F-box family protein [Arabidopsis thaliana] pir||G86268 hypothetical protein F13B4.6 - Arabidopsis thaliana gb|AAF99824.1| Unknown protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0173F03
Clone
Clone name
hba-173f3
LE_HBa0173F03
P173F03
Clone type
BAC
Contamination
none
Estimated length
88,928
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found