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Clone Read LE_HBa0162M04_T7_103879

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162M04_T7_103879
Primer
T7
ID from Seq. Facility
LE_HBa_162_M04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
524 trimmed for vector and quality, 805 raw
Genbank Accession
DU093967
Sequence
>LE_HBa0162M04_T7_103879 (raw untrimmed)
TCTGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAATACACAATGTTCAAATCCTCTTTTCAGGTCCCCCTATGTTACTACCACT
ACCATAAGATTGCTTTACGTTGGCATTGGAGGGGAACGCGAGCCATGTTACAAGCTCGAGGAAGAGACAGGGTTGTATTAGGATTAATAGGAATCTGAAA
GGGAATGCCACCAGTTGCAATAACACAGAGACAAGCAGAGCCATTGCCCATCATTGTTCTCAGTGCATTGCAGCATCCAGGAGATGGTGCAGCCGTTCCG
TTGCCGTTGGACAAGAAATTCAAGCAAGGAGTAAAACTAGTCAGCATTGTTGCTGTACATGGAGATGTCACAATTTGGGCATTAATAGGCAAAATTGCTA
AAACAATAATGCAAGAAAGGAAAGAAATAGAGTAATGAAAAGCCATAGTAACTAATAGGAAGTTGTTTTTTTGTGTAGTTATTTTTATGATATGATTGTA
ATTTGAATGGTTTAATTGGTGGGGAGAAGTAAAGAGGGAATATATAGAGGGAAATGTAGGTGAATGAAGATCAACTACTTTAATAAACTTCTCTTTTGGT
CTAATCTTCTCAATACTTTAACTGTGTCTTTTTGCCGTGGCTTAATTGTTGTTCTTAACCTCCATCCCCAATTCTCTTAATCCTATTTTTTCTTACGTAT
AAATTTAAATGCAAAACTGTTTGGGTCTCCATGATGCCACTATTCCTTTACTGAGTGATTTATCATCGGTCTATCCAACTCTCAGGGATTCACCAGCTTT
CTATC
>LE_HBa0162M04_T7_103879 (trimmed for quality and cloning vector)
AGCTTGAATACACAATGTTCAAATCCTCTTTTCAGGTCCCCCTATGTTACTACCACTACCATAAGATTGCTTTACGTTGGCATTGGAGGGGAACGCGAGC
CATGTTACAAGCTCGAGGAAGAGACAGGGTTGTATTAGGATTAATAGGAATCTGAAAGGGAATGCCACCAGTTGCAATAACACAGAGACAAGCAGAGCCA
TTGCCCATCATTGTTCTCAGTGCATTGCAGCATCCAGGAGATGGTGCAGCCGTTCCGTTGCCGTTGGACAAGAAATTCAAGCAAGGAGTAAAACTAGTCA
GCATTGTTGCTGTACATGGAGATGTCACAATTTGGGCATTAATAGGCAAAATTGCTAAAACAATAATGCAAGAAAGGAAAGAAATAGAGTAATGAAAAGC
CATAGTAACTAATAGGAAGTTGTTTTTTTGTGTAGTTATTTTTATGATATGATTGTAATTTGAATGGTTTAATTGGTGGGGAGAAGTAAAGAGGGAATAT
ATAGAGGGAAATGTAGGTGAATGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.942486
Expected error %
0.559698
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g22620.1 Score 110 E Value 3e-25 Identity 17.80% Align. Length 308bp (58.78%) Frame 3
68416.m02856 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g48140.1 Score 92 E Value 1e-19 Identity 14.30% Align. Length 299bp (57.06%) Frame 3
68415.m06026 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM44945.1| Score 110 E Value 1e-23 Identity 17.80% Align. Length 308bp (58.78%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAK59510.1| unknown protein [Arabidopsis thaliana] dbj|BAB01476.1| unnamed protein product [Arabidopsis thaliana] ref|NP_566713.1| protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_469964.1| Score 100 E Value 2e-20 Identity 14.30% Align. Length 341bp (65.08%) Frame 3
expressed protein [Oryza sativa (japonica cultivar-group)] gb|AAO37995.1| expressed protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162M04
Clone
Clone name
hba-162m4
LE_HBa0162M04
C03HBa0162M04
P162M04
Clone type
BAC
Contamination
none
Estimated length
105,493
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found