Clone Read LE_HBa0162M04_SP6_103878

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162M04_SP6_103878
Primer
SP6
ID from Seq. Facility
LE_HBa_162_M04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
618 trimmed for vector and quality, 807 raw
Genbank Accession
DU093966
Sequence
>LE_HBa0162M04_SP6_103878 (raw untrimmed)
GGTTTCCCTAGGTCGGTTGAGTTAGACATAAAGCCATGGTGGGCTATGAAGAAGTTAAAATTGGATTGGAGCCAAGTTGGAGAGCAACGGTTAAATGGGT
TGAATGAACTTGACCTTTTTCGCTTGAAAGCCTATGAAAGCTCAGCCCTATATAAAGAAAAGATGAAGAAGTATCATGACAACAAAATTGAAAAACGAGA
GTTTATGGTCGGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGATTGGTCCTTACATGGTTACCCAA
CTATTCCCTCATGGAGAAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTAAATGGACAGCGCATAAAAATCTATCTAGGGCATGTTGAATCGG
CGAATGAAGTGATTGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCTGGCGCTTGTTGGGAGGCAAC
CCAATACTTATCGTCTTTTTAATAATGGTAGAATTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCG
CAGTAGCCACTGATGGATACAACGACGGACCGTTGCGCATGAAACGAACCGTCCGTATGCATCCGTCACACCCAGGTACGTATTTCTATCATTTTTGAAA
ATAGGGACACGCCCCGACGGAATCCTATGATGGGGCTTTTCTAGTGCTACTGTCCGTCCTCCTGGTGATCTCTTCCCCTTTTTTTTAATTTTCCTTTGAC
TGTTCCG
>LE_HBa0162M04_SP6_103878 (trimmed for quality and cloning vector)
TGAGTTAGACATAAAGCCATGGTGGGCTATGAAGAAGTTAAAATTGGATTGGAGCCAAGTTGGAGAGCAACGGTTAAATGGGTTGAATGAACTTGACCTT
TTTCGCTTGAAAGCCTATGAAAGCTCAGCCCTATATAAAGAAAAGATGAAGAAGTATCATGACAACAAAATTGAAAAACGAGAGTTTATGGTCGGGGATT
TAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGATTGGTCCTTACATGGTTACCCAACTATTCCCTCATGGAGA
AGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTAAATGGACAGCGCATAAAAATCTATCTAGGGCATGTTGAATCGGCGAATGAAGTGATTGAG
GCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCTGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTT
TTTAATAATGGTAGAATTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGATGGA
TACAACGACGGACCGTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974819
Expected error %
0.500345
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82031.1| Score 139 E Value 4e-32 Identity 15.60% Align. Length 416bp (67.31%) Frame 3
pol [Pisum sativum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD23707.1| Score 139 E Value 7e-32 Identity 17.60% Align. Length 419bp (67.80%) Frame 3
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||G84476 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162M04
Clone
Clone name
hba-162m4
LE_HBa0162M04
C03HBa0162M04
P162M04
Clone type
BAC
Contamination
none
Estimated length
105,493
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found