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Clone Read LE_HBa0162K04_T7_103783

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162K04_T7_103783
Primer
T7
ID from Seq. Facility
LE_HBa_162_K04-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
68 trimmed for vector and quality, 793 raw
Sequence
>LE_HBa0162K04_T7_103783 (raw untrimmed)
CTGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTTGAGCTTTATCTATATAATCTTTTGGAGGGCTTCTGNGTTTCATCCATT
TGCATAGCTGCCCCTTGGAAGAGCCCAAGNNNNNANNAGNNCNAGAGGNACAANNNNNNNNANNNAAAANACAGNNAGNACANCCCGAACCCAGAAGGCC
AAGGNCNCNANCNCACANNNNCCAACNNGGAGGGGCCCCAANACCNCAACAGNAACNACAGCCGNNACCCCCACCACACAGCAAAGNANCAGACGCCNGC
ANNCAGAAAGACGGGACGGCCNNAGNCGCAGCCCCCAGACAACANCCNNACCCANCAGCCAAACGGACGACGCCGCNCCNCGAAAGCCGAACAGNGGCCC
CCAACACCAACACCCNCAAAGCGACGAACGGCACACCCGGGNGCAGCACCCNNCCGAGCCCGAGACAAAANACNAANNGGNGNCNCNANACAGNCCANAC
AGCCNNCGACAAAACAGGCACCACACCCAGCGCCGGGGCACACACGCGGAGACCAGAGACACCAAGGACAGGGACNACCAACCAACCCAGCANGCACCCC
AAAAACAAGACCACACGCCAGACAAGCAAAAAAGGAACCGCAAGCCACCCACGCCAAAAACCCGACCCGACCCCAAAAAAAACCCCACCCCCCCGAAAAG
AAGAGCCGACCGCCGGCGACCAGAACCCAAACCAAACCGACCCAAGAAAAAAAACCAAAAAACCCGACCCAAAGCCCCCCACCGCCAAAAAAN
>LE_HBa0162K04_T7_103783 (trimmed for quality and cloning vector)
AGCTTATTTGAGCTTTATCTATATAATCTTTTGGAGGGCTTCTGNGTTTCATCCATTTGCATAGCTGC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.820512
Expected error %
6.74512
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162K04
Clone
Clone name
hba-162k4
LE_HBa0162K04
P162K04
Clone type
BAC
Contamination
none
Estimated length
111,669
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found