Clone Read LE_HBa0162K01_T7_103777

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162K01_T7_103777
Primer
T7
ID from Seq. Facility
LE_HBa_162_K01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
184 trimmed for vector and quality, 806 raw
Sequence
>LE_HBa0162K01_T7_103777 (raw untrimmed)
GGGGGGATCCTCCTGGAGTCCGACCTGCAGGCATGCAAGCTTCCTAGAAGGCTCATAACCTCACCCTTTGTTCTTTGGAGGTGGCAATTCTTGAATTGCT
TTTATTTTTGAAGGATCCAACTCGATATCTCTTAGACTGACTATAAACCCCAAAAGCTTCCCCGATGGTACTCCAAATACACATTTTGTAGGATTAAGCT
TGAGATTATACCTGCGGATCCTTTCAAATAATCTTCTTAAATCTTTCTCATGATTTGACTATTTTTTTAGATTTAATGATAACATCTTCCACATCAAACT
TCGATTTCTCTATGCAATCGTATCGCGAAACACGGTTGTCATTGCTCTCATATAACTTGCCCCTGCATTTTTTAATCCAAAAGGTATTAACCTTATAACA
ATATGTACCCCTCGGACTTGATATAAGATGTTCTTTCTGCATCTTCATCTTTTCATTACAATCCGATGGTATCCCTCTTAATAATCCACAAATTATGAAA
CCTCCTGTCGACCTACATTATTCATTAAAATATTGATGTTACTCTTCGGTAAACCTCCTTTTTTAACTTACCTTATACATATGAAGATTATCAATATATT
TTGCGAACTTTTCCAGTTCATCCTAAGGGACGGAGTCTGAAACTGCTTTATTAATTAAGTGTATTAGATAGACCTTTGAATGTCTGTGGTTTACTGGTGT
GGTGTGTGTACTTCCCCTCTCTTGATTTCCGCATCTCCTGTACTATTGTGCAGTTATTTGTCTACCTACCGTTCACTAAGTTCAGAGTCTTATTCGTAAA
ATAACN
>LE_HBa0162K01_T7_103777 (trimmed for quality and cloning vector)
GCTTCCTAGAAGGCTCATAACCTCACCCTTTGTTCTTTGGAGGTGGCAATTCTTGAATTGCTTTTATTTTTGAAGGATCCAACTCGATATCTCTTAGACT
GACTATAAACCCCAAAAGCTTCCCCGATGGTACTCCAAATACACATTTTGTAGGATTAAGCTTGAGATTATACCTGCGGATCCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946609
Expected error %
0.876323
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 99 E Value 3e-20 Identity 30.10% Align. Length 155bp (84.24%) Frame 3
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 88 E Value 7e-17 Identity 27.60% Align. Length 155bp (84.24%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162K01
Clone
Clone name
hba-162k1
LE_HBa0162K01
C02HBa0162K01
P162K01
Clone type
BAC
Contamination
none
Estimated length
86,654
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found