Clone Read LE_HBa0162E23_SP6_103532

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162E23_SP6_103532
Primer
SP6
ID from Seq. Facility
LE_HBa_162_E23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1114 raw
Sequence
>LE_HBa0162E23_SP6_103532 (raw untrimmed)
AGAATAGATGGATGATGAAAAGGGAAGAGGGAGAATGAAGATATAAGGGAAGTTTTACTACAAGGACAGAGGAGCTGGGACCCCACGTGTGAGGAGGGAC
CCCTGTAAAGATGAGNATATATGTGGGTGGGCGACGCACAATGCGCGAACCCTTTTGAAGGGGCCCCCTTTAAAGGAAAGGGGAGAGTGGAGTACCCAGA
CAATGCAGGTGAGTGGGAATGATTGAACGGTAGATAGCCTTTCCAGAGGACCGCACCTCGAACGAGAACCGCATAGCCACCAAAAACGGACCGAAGAGGG
GGGAACAGGAGCGACGGTGAGCAGCAAGTTGATCTGAGGCAGAGAGGGGACAGGGTGCCGGCGTGGAGTGCAAAAAGTGGAGGGCGGGGACGATGCACAG
ATTCAACGGACGACGCCGAGTGCGTGATCAAGAACACCGATGACTTAACCGAGGCGCGAAAGAATGTCGGGTTATGGAGCGGCGGCCAGTCGCTGGGTAT
ANGGGAGGGGTGCGTGGTGGAGGTGAGGAGATAGCTGAGTGGGCGCTGTTGGGATAGGAGGAAAGTAGCAAGAACCAGACAGCTCGAGGGAGAGACAAAT
ACACTATGATTAGACTATATGGATGAAATTATTCACGACAAAGCATGATAGGGACACGAGTGGGGGCGAGATAGAGAGCGGTTGGTAGAGAGCGTGGAAA
TAGAAGATGAAAGACAGAACATGTTAGAGTCTCCAGAAACAACCGAGATTGATGAGCTAGTCCTGTCAGAGGCACGCCATTGGGAGCACGCGACAGCGCC
AAGACCCGATATACCGCGCACGTCGGCGAGCGACGGTAACGACAGTGTAATGAGAATAGACGAGGACTGCGGGCCAGAGAAGTTGCAAAGCGACGCCTGA
ACGATCGGATCATGTACGTCGAGCTCATCCAGTGTCACTGAGAGATGCTACACGGACGAACGTGAAAATGCTAATAAGCAGAGAGGTAAGCCGCGTTATG
TGAACACAGCTGAAATATGAGCACACAATGTCAGACGAATAGCTTGCAGGAGAGGGAGAACTCCATGTCGGCGAGGTAATGAATAGTCTGGGGAATCAAG
GGCATCGTTGGGGT
>LE_HBa0162E23_SP6_103532 (trimmed for quality and cloning vector)
TGG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.63148
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162E23
Clone
Clone name
hba-162e23
LE_HBa0162E23
P162E23
Clone type
BAC
Contamination
none
Estimated length
68,142
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found