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Clone Read LE_HBa0158K23_SP6_103052

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0158K23_SP6_103052
Primer
SP6
ID from Seq. Facility
LE_HBa_158_K23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 810 raw
Sequence
>LE_HBa0158K23_SP6_103052 (raw untrimmed)
CGTGGGTTTTCAAGAACGCCGAAGTGTCTGTGGCAGATGGCAGTCGCCTACATCACGTCAGTTAGAACTGACATAACAATGGTCAGAACGGACATTCAGG
CATTGGCATAGACATGCAC
CGCCTTTGGGACCACACAGAACAATCAGAACGACAGTCNAGCAGTGGCATGACATACACCGCCGTTGGGGTAGAGCACACA
CGTGTCGGAACAACGGGCGAGTGTCGGTATAGTCATCATCCTCCTTAGTGGTAGAACTAACATGTAAATCTATTATATAGCTGCGGTATTAGAACGTCCA
ACTGATGGCAAGCTGATTAACCATCGACTATCTAATGTTCTAATCATAGTGTAATCGAGTCATTGGGGTGCACGCCTGGTGACAAACAACCCATGTTATG
ACAAGGCGCGTTTATATATCTGAGGCATATACGGTATTATAACATACTTTTTTCTTTAAATTTCAGTGATCTCCATATCTCTTCAACTATTCATCTCTGA
CTCATCTATCGCGATAACCATGCAATGAACTCCCACCGGAGCTGTTCGCCCTCTCTCTCCACTCCCAACCCTCGACCACTATATCTCTGCCACCATCTAA
CACCAAACTGAAAACTAGAACTTATCGTGCACGTTCAATAGGTCAACATAGCGCGCAATCACTCATAGTCAAATACTGACAATGAAACTAAACCTCTATA
AAAAAAATATGTAAATAATGATTATGGTCATGATTGTCGTACATTTCTTCTGTCTACGCTTTTCATATATGATTTATAGTAAAAAATCAAACATGTCATC
TATGACTGAC
>LE_HBa0158K23_SP6_103052 (trimmed for quality and cloning vector)
CGCC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.84376
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0158K23
Clone
Clone name
hba-158k23
LE_HBa0158K23
C02HBa0158K23
P158K23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found