Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0049O17_SP6_10304

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0049O17_SP6_10304
Primer
SP6
ID from Seq. Facility
LE_HBa_049_O17-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
866 trimmed for vector and quality, 927 raw
Genbank Accession
Sequence
>LE_HBa0049O17_SP6_10304 (raw untrimmed)
AAAAAAAAAAAGGTTTNCNNCCACCAGTGTNNNNNNACCNNNNNATCCCAAAATCTGGAAGTCATCACATCAAGAACATCTATCCTCAAATTACCAAGTC
TAAGAGTATTTAAGAAACCAAAATAAGTAAAAAGATGGTCCATGTATGAAATTCAAAGACATCAAGACGTGAATGAGAGAATCCAGCACAAGCTAGAAAT
AATAGCTCACCCTGAACTCTGATGTGCTGGAGACTGACTAGAGCTGGGGGAGAGTCGAAGTTGATGATACACTTGCTGCACTCCACAAAAGAACAAAAAA
GAAAATACAAGTAGGGGTCAGTACAAGGAACACGTACTGAGTAGGTATCATCGGTCAACTCAAAATAGAAGCCAATATACATTGAATAATAATATAAAAT
CAACTACAATACTTAACAGGTGGCAAACAACAAACACATGAACCATTGACAACAACACCATAATAGGTACAACATCAATCACAACATCAAGCACACCTAT
GAGGACTTATGTCTCCACACCATACTCATTTGGGAAATAGGTTCTTTGAGTTTAAGTATATTAAGTTAATTCAAGATTCCTTTCCTTTAATGTTATCGTG
TCGGAACGTGACACTCCGATCCCATATACCGTGTCAGAACGTGACACTCCGATCCCATAATATCATGTCGGAACGTGACACTCCAATCCAATTATCTCAT
TATTTTATTTCATCAAGCCTTCTTTATTCAAGGCGTCATTTTAATAGAGAGGGTTCAAGATTAGAAATTCAATCGTCTCATAATTTTAGGCCAACCACAG
ACCACACAATCAAGACATTCAACCACACAATCAAGTATATAGGAGACTTTACATATCACTCAATACATATTAATCGCTATTGAGAGTTATCTATCAATAG
AAATAAACATAACCTACTCCACGGAAA
>LE_HBa0049O17_SP6_10304 (trimmed for quality and cloning vector)
AAATCTGGAAGTCATCACATCAAGAACATCTATCCTCAAATTACCAAGTCTAAGAGTATTTAAGAAACCAAAATAAGTAAAAAGATGGTCCATGTATGAA
ATTCAAAGACATCAAGACGTGAATGAGAGAATCCAGCACAAGCTAGAAATAATAGCTCACCCTGAACTCTGATGTGCTGGAGACTGACTAGAGCTGGGGG
AGAGTCGAAGTTGATGATACACTTGCTGCACTCCACAAAAGAACAAAAAAGAAAATACAAGTAGGGGTCAGTACAAGGAACACGTACTGAGTAGGTATCA
TCGGTCAACTCAAAATAGAAGCCAATATACATTGAATAATAATATAAAATCAACTACAATACTTAACAGGTGGCAAACAACAAACACATGAACCATTGAC
AACAACACCATAATAGGTACAACATCAATCACAACATCAAGCACACCTATGAGGACTTATGTCTCCACACCATACTCATTTGGGAAATAGGTTCTTTGAG
TTTAAGTATATTAAGTTAATTCAAGATTCCTTTCCTTTAATGTTATCGTGTCGGAACGTGACACTCCGATCCCATATACCGTGTCAGAACGTGACACTCC
GATCCCATAATATCATGTCGGAACGTGACACTCCAATCCAATTATCTCATTATTTTATTTCATCAAGCCTTCTTTATTCAAGGCGTCATTTTAATAGAGA
GGGTTCAAGATTAGAAATTCAATCGTCTCATAATTTTAGGCCAACCACAGACCACACAATCAAGACATTCAACCACACAATCAAGTATATAGGAGACTTT
ACATATCACTCAATACATATTAATCGCTATTGAGAGTTATCTATCAATAGAAATAAACATAACCTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949899
Expected error %
0.0794608
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0049O17
Clone
Clone name
hba-49o17
LE_HBa0049O17
P049O17
Clone type
BAC
Contamination
none
Estimated length
53,876
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found