Clone Read LE_HBa0158J05_T7_102969

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0158J05_T7_102969
Primer
T7
ID from Seq. Facility
LE_HBa_158_J05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
532 trimmed for vector and quality, 887 raw
Sequence
>LE_HBa0158J05_T7_102969 (raw untrimmed)
CTCGGGCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAAATACAATTAAAAGATGAAATTCTCTAGAGGGGACCTCAAAGNNNTAGNT
NNAATGGACGATTCCTTTAGAGGAGGNNATNNGNTTTNATGTAAANANNAAAANNGAAAAAGTNNATGGAGTAATTTGAAGNAAAAAGTGAAGNAGAATG
GNTATAAGAAGTAAGTGAAGTAGAATGGNTATTAGTTTNTTTNTNGNTAAAATNATTTTGNGNGTNATTTTTTAAAGNANAANTTATNNGAAGTGNATTG
NTTNAAGNAGTAATNNNATAGTTNAAATTTNTTTAAGAGATGGNTTTGAANAAAAATGTGGAAGNTATGTGATANANGAGGAAATNATATGTNGATAAGA
AGAATGANTTATTTGGTATTAAGTNTTATAANATATGTTGTTATATGTGATTTGATAAATGTTTTATATATGTTGAATTAGATTTTTTGAAATGAAAGGA
GAATTAAAATTTTATAATGATAAATTAATTAGTATAATTTGTTGAGTTAGTGAGATGTTAAAATGAGGTAGATTATGATTAATTATTTTGATATTTAAAT
TTTTAGTGATTTAAAGGNTATTGATATATTGGTTATAAGGTAATAAATAATTATTGTATTAATATGAGTAGTATTTTGATATAAATTATTAATATATATT
ATGTAATATATTATATAATGATGGGGAGATTGTGAATATGGAGTAAGGAAGATTATTTGAAATTTATTTAATTGATATAATTGTGAATTAGTAAAATGAT
AAAATTGTAGGATTATAAGATTTAATAGAGGTTGTAAGTGTTTATTGTGGGATATATTGGTTGTGTTTTTTTTGGTGATATTGGAGT
>LE_HBa0158J05_T7_102969 (trimmed for quality and cloning vector)
AGCTTTAAATACAATTAAAAGATGAAATTCTCTAGAGGGGACCTCAAAGNNNTAGNTNNAATGGACGATTCCTTTAGAGGAGGNNATNNGNTTTNATGTA
AANANNAAAANNGAAAAAGTNNATGGAGTAATTTGAAGNAAAAAGTGAAGNAGAATGGNTATAAGAAGTAAGTGAAGTAGAATGGNTATTAGTTTNTTTN
TNGNTAAAATNATTTTGNGNGTNATTTTTTAAAGNANAANTTATNNGAAGTGNATTGNTTNAAGNAGTAATNNNATAGTTNAAATTTNTTTAAGAGATGG
NTTTGAANAAAAATGTGGAAGNTATGTGATANANGAGGAAATNATATGTNGATAAGAAGAATGANTTATTTGGTATTAAGTNTTATAANATATGTTGTTA
TATGTGATTTGATAAATGTTTTATATATGTTGAATTAGATTTTTTGAAATGAAAGGAGAATTAAAATTTTATAATGATAAATTAATTAGTATAATTTGTT
GAGTTAGTGAGATGTTAAAATGAGGTAGATTA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.95502
Expected error %
21.1027
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0158J05
Clone
Clone name
hba-158j5
LE_HBa0158J05
C12HBa0158J05
P158J05
Clone type
BAC
Contamination
none
Estimated length
82,447
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found