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Clone Read LE_HBa0144L08_SP6_100766

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0144L08_SP6_100766
Primer
SP6
ID from Seq. Facility
LE_HBa_144_L08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 775 raw
Sequence
>LE_HBa0144L08_SP6_100766 (raw untrimmed)
GATTTGAAAGGGTGTGTGGTATATAGAGGTGAACACTAAGATGAGAAAGCCGAGTGCCTCTATGATGATTCTGCTATAATATTGATACGGGATTTAAATG
GAAACATTGGAGTAGATGTATTGATAATATATTGTATCTTATTGGG
AGACCATTTCATCCTTCCAGTGATATGTTCTAAGCTTGTATAGCTAAATCAGGA
ATATTAGGATAAAGCGTTATGTGACGTAAAAGGTTGCTTTTCGTACGTGGTTCGCTCGGATGAATAGACATTTTGATCGCGAACGTATCCGAACGTCTTT
GAGAGTGCAGGGAAAAGGAAAATTATATGCGCAAATTGAAGAAGATTGCGAATGGTCTAAAACCAACCCCGGAGAAAAGTTACATAAAATTAAGATCTTT
CATAATGCATTCGGGTTTCATAAACACTACGTGAAACAATTGTGTTTTTGATCTATAAATATCTCAGAAGATTACTTGAATAATGCTTTGAACTATGGAG
AGGACATGCTTCTTATTGGTCTAAAAGCTAGAACGTGTAAATAGTTGTAAGCAACATGTGATTAAATCTTTTACTATGACAAACTTGGGACTCATTAAGA
GAACTATTCTCGTATGCATCGTTAGAGATATATTAACAGAGATACTTGAGATATCTCGATAGGACTCGCGCACAAGTAGAACTAGGCTGAATTATTGTGT
ACCCATCCTAGGATGTCATTCTACATCTCGACTATACCCTTCTTCATGGGAACTAACAAATGTCACATGCGCTTA
>LE_HBa0144L08_SP6_100766 (trimmed for quality and cloning vector)
AGACCATTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.2358
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0144L08
Clone
Clone name
hba-144l8
LE_HBa0144L08
P144L08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found