Clone Read LE_HBa0144A23_SP6_100268

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0144A23_SP6_100268
Primer
SP6
ID from Seq. Facility
LE_HBa_144_A23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1452 raw
Sequence
>LE_HBa0144A23_SP6_100268 (raw untrimmed)
TACGCTCCGTACCAGCCATTGACCGACGAACATTCAGACATTCTTCACAGACAAACATAAAGNACACCAACAGACCTCACTTACTGGTTGCGGACTAGCC
AACCTAGAACCAGCGATACACACATTGAGTACTAAACTCCGCCACATATACGGACAGAATCATGCTGACTGAAAGCAGNAGGNTTAAGGCGCGATCACTG
GGGGAACGCGGATAACATGTAGATTGGTCAGTAGTGAATGCGTATGCTTGTCTTTACGTGCATATAATACAATCTGTGCTTACTACTTCCACACGCACAG
CGAGGAGTACATGGACCGCTCATAACGTTCGCCCTTCACACCCCCTTGTACGACGTTGATCACGCAACCTTTTCTATGCTTTCAGCTGACCGATATACTA
CATGGATGTGCACGCAGATAAAATGTGGTAAGCAGTCATCGTGCTAAAGTGTGTTAGCACACTAACGCACCATCGAGAGTGTTNCAACAAAGCGTATAAT
CGCTGCACAGTAGACACCCTGCCTACGCTCTATGTACATATGCTGACATAGAACGAATAGGCGGCACACGGCACGTAACTATCGAGACGATGGATGAACG
TTTGCATCCTACGCTACGAGATCTCTCACTAATATCGTAGACTTCTGTCGTTAGTCACGGAACGAATTAGATGCACGAACGAACCTCACCAACTAACAAT
CTAAACATACACCTGTCTACACTCTAACGTCGCATACTAACNGTGATACGGAAAGCTATGCATACCTCTAGCAACGGGTCAGATATGCACTGCTATTAAT
AGCACAGCGGCGATGTCACGTTAATACTGCGTACTAGACTATTGCCTCCAGAACATGGTGCCTCTGAATCACCGTAACACCATATAAGGACTACGCAAGC
GATTAAGGATTCACTACTGAGCACTATGAGGACTAGCCGTAAGACGCTAACAAATAGACCTGATCCTTGCGTCTTTGTGCGGCGTGTATGCCTGTGCGTA
TGCTTGTTGTTGGCAAGCCATACTGGNTATAAGGCTGCTTGACCTGTAGTAATCCGTGCGACACGAACGATAGCTATCGTCGGATTTGCGTTGCAGGAAG
GCGGTATACACAGTGCATGTTAATATACGAGATATGCACGTTCTATTGATATCATCTCTACACATCTATTATTGTTTATCTAACAACTGACTATTCCATC
CTCATACACACAATCTTACTANAGAATTGTCAGGACAACATTAAATGAGGAGTATCACGTATNAGCAAGTTAACTATGTGCGGTCTTTATATATATGGTT
CCATGTTGTTGTGACGCCAGGTTCATCACAATGATAACGAGATCTACTGATTTAAAGATGCATCTAACTAGTTACCTCGGTTACAGGTGACGTCTGTAAT
GACTACGTAGATTAAGTGTGGCAGCTGGTATCGCTAACGTGTGCCGACAGAC
>LE_HBa0144A23_SP6_100268 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.36881
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0144A23
Clone
Clone name
hba-144a23
LE_HBa0144A23
P144A23
Clone type
BAC
Contamination
none
Estimated length
118,890
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found