Clone hba-50p21

Clone
Clone name hba-50p21 LE_HBa0050P21 C08HBa0050P21 P050P21
Clone type BAC
Contamination none
Estimated length 109,542

Library
Name Tomato HindIII BAC Library	Cloning host E. coli
Organism Solanum lycopersicum (formerly Lycopersicon esculentum)	Cloning vector pBeloBAC11
Accession Heinz 1706	Restriction enzyme HindIII

Ordering Information
BAC Clones BAC clones can be ordered from the clone ordering page at TFGD

Physical mapping

Fingerprint Contig Builds (FPC)

Tomato FPC (AGI 2005): ctg1834 : [coherent], 3 members:
C08HBa0050P21, C08HBa0148A08, C08HBa0292D13

Marker matches - overgo what's this?

Plausible matches

Probe	Map	Plate	Well
T1358	Tomato-EXPEN 2000	plate 13	B3

Additional Info

Overgo Plating Progress Report

Conflicted matches

None

Marker matches - BLAST

Marker	Evalue	Identity %	Score	Params
T1017	4e-21	1	97.60	evalue cutoff: 1e-10; min len = 25; min identity=0.96

Marker matches - manual

None

Physical map (from marker matches)

View on physical map chromosome 8

FISH map

Not on FISH map

FISH images

None

IL Mapping

None

Sequencing

This clone is being sequenced by the Chromosome 8 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.

Sequencing Project

Chromosome 8

HTGS phase

2 - fragmented, ordered

Sequencing Status

complete

Sequencing Organization

Uploaded by account 'japan'

Full Sequence

110,809 bp
C08HBa0050P21.1
AP009267.1 (GenBank)

[View]

End Sequences

LE_HBa0050P21_SP6_11128 (Good)
LE_HBa0050P21_T7_11129 (Good)

Warnings

sequence is not finished to HTGS3

FTP

Chromosome 8 Sequencing repository (FTP)

Chromosome Assembly

this clone is not part of a chromosome assembly

Restriction Fragments

HindIII in vitro (31)

1137, 1324, 1324, 1651, 1651, 1770, 1770, 2140, 2154, 2236, 2236, 2283, 2283, 2367, 2367, 2527, 2610, 2610, 3323, 3323, 3451, 3915, 4905, 5060, 5153, 6399, 6522, 6666, 6966, 8346, 9073

HindIII in silico (30)

1138, 1308, 1310, 1379, 1499, 1561, 1632, 1743, 1755, 2127, 2259, 2314, 2379, 2412, 2547, 2643, 2646, 3338, 3345, 3484, 3931, 4760, 4858, 4917, 6321, 6456, 6659, 7151, 8312, 9023

Fragment Lengths Match Score

0.97

Annotations

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LE_HBa0050P21 has no browsable sequence annotations

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temporarily unavailable

User comments

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End Sequences

e.g. crystallin

Overgo match to marker what's this?

Map	Map position and cM
Chromosome / Linkage Group

IL Bin Mapping

Assigned to project	Mapped to chr
Mapped to bin

Verification

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Clone hba-50p21

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