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Clone hba-237a2

Clone and library  
Clone
Clone name
hba-237a2
LE_HBa0237A02
C10HBa0237A02
P237A02
Clone type
BAC
Contamination
none
Estimated length
136,370
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg587 : [coherent], 6 members:
LE_HBa0171D18, LE_HBa0192G18, C10HBa0237A02, LE_HBa0243P17, C10HBa0251C20, C10HBa0271P22
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1044Tomato-EXPEN 2000plate 15F8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 10
FISH map 
View on FISH map chromosome 10
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
448-02 1CompositeFluorescencePhase10.5%
448-03 1CompositeFluorescencePhase14.4%
448-10 1CompositeFluorescencePhase9.5%
448-12 1CompositeFluorescencePhase8.7%
448-16 1CompositeFluorescencePhase12.5%
428-17 1CompositeFluorescencePhase9.8%
448-19 1CompositeFluorescencePhase8.9%
428-21 1CompositeFluorescencePhase10.4%
448-23 1CompositeFluorescencePhase8.9%
448-24 1CompositeFluorescencePhase11.2%
448-25 1CompositeFluorescencePhase11.4%
448-27 1CompositeFluorescencePhase10.5%
448-31 1CompositeFluorescencePhase11.1%
448-41 1CompositeFluorescencePhase9.7%
448-43a 1CompositeFluorescencePhase11.2%
448-43b 1CompositeFluorescencePhase14.3%
448-45 1CompositeFluorescencePhase11.2%
448-48 1CompositeFluorescencePhase11.3%
448-54 1CompositeFluorescencePhase9.9%
Mean±sd10.8%±1.6%

Given an estimated length of 4.8µm for chromosome 10P and the mean percentage above, this BAC is approximately 0.5µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 10
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
151,417 bp
C10HBa0237A02.2
AC238922.12 (GenBank) 		[View]
End Sequences
Warnings
none
FTP
Chromosome 10 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (17)
1672, 2989, 3099, 3244, 3319, 3482, 4133, 4625, 5370, 5845, 6322, 6646, 8509, 9528, 12053, 18681, 36853
HindIII in silico (33)
1351, 1603, 1659, 1663, 1675, 1725, 2248, 2301, 2356, 2417, 2477, 2533, 2752, 2974, 3094, 3257, 3346, 3496, 3499, 4106, 4140, 4525, 5048, 5534, 5546, 6170, 6199, 6591, 7413, 8406, 9478, 11462, 17452
Fragment Lengths Match Score
0.71
Annotations  
Browse
LE_HBa0237A02 has no browsable sequence annotations
Download
temporarily unavailable
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Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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