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Clone Read LE_HBa0237A02_SP6_396375

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0237A02_SP6_396375
Primer
SP6
ID from Seq. Facility
LE_HBa_237_A02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1344 raw
Sequence
>LE_HBa0237A02_SP6_396375 (raw untrimmed)
AAGACGAAGAGGCCGAGACGNAGACGATAAGTATAAGAAAAGCAAGAGAAACAGGAGGGGAAAGGTGGCCCCACCCGCTCACGGGGAGGGANGNANGAGA
ANNNAAANAAAGAGGAGGAGGAGGGANANGAAGCAGAGGCNGCGACCTCATCCAGGACCAGGAAGAAGAACCCGAGCGGCACCAAGAAAGCAACACATCA
AAAGAGGGGTACTCACAGAGACACGAGAGGCAGCCGACGCAGAGCCGGCGCGGCGACGAGCACAACAGAACGCCGCTCACAGCAGACACGAGAGACGCGG
AGCGAGGAGAACAACACAAGCAAGAACCAAGACGATGAGAGGGACAAGAGAGACGCAAGAAGGAGAAGGAGGACCGAGCACATGAAAAACTAGAGCACGG
TAGCGCAAAGCCGAAACAACCGAAAGCGACGACAAACACGCGACGAGGTACGGAACTGAAGACGCAGACACCCACAGCAAAGGAACAGCGACAACAACAA
CGAGCCGGCGAGCGAAAGGGAAGCGAACACCAGTGGCCACCCAACAAGAGAAGGAGAGCCAGGCGAACGCGAGGAAGACGAACGCAGAGCACAGCAAGGA
AAACCGAAGCAAGCGCGAAAAGGCGAACGAGGCAACGAGAGCCGACAGACACAACACAGGCGCCCGAGAGCGGCTAAGACAACGAACGACCCACCAACCC
ACCAGAGGAAACAAGCAACCGAAGGGACAGAAGAACAAGAACAACAAGCACAGGGAAGGCAAAGACGGAGAGCGAGCGACGCAACACACAAGCAACAAGA
AGCCCGAACCATAGGGACAACAAGCAGGCCGCCACCACAACACCAAACATCAAGGCGAAGACAAGGGAGACGGCAAACACGGGAGGAGACAGACAGGGCA
CGGGAACGGCGAAACAAGCGGACCCAAACAAAAGAGCGGCAAAGAAAGCCAGGACATGAGGAGAAACCAACGGCGGACGCAAACGGGCAAAAACGCCCGC
AAGAACCAGTACAAAGGAAAGACCACACAGGCAAACGAGAAACAAGCCCAACAGAGCACGAGCACGCACACCGCGGAGGCAGAACGAGCCGAGCAAGCGC
AGACAACAAACAGAGAAAGACACAGAACACAACACAGACGCAAGGAAGACGAGGAGCACAAGAAAGGGGGAAACGACAAGGAGCAGACGTGAAAGAAGCA
AAACAGCGACAAGAAAGCGGCAACACGCGGGGAACGCGACAATACGAAAGCGGGAGGCCGAGAGCAACGGACGCAGAACAACAAGAGCGAAGCGACGAAG
AAACCCAGAGAGAAAGCGGAGCAGCGAAGACAGCAGGCAACGCA
>LE_HBa0237A02_SP6_396375 (trimmed for quality and cloning vector)
AG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.19905
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0237A02
Clone
Clone name
hba-237a2
LE_HBa0237A02
C10HBa0237A02
P237A02
Clone type
BAC
Contamination
none
Estimated length
136,370
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found