Clone hba-11e16
 Clone and library
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Clone and library
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| Physical mapping
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| Fingerprint Contig Builds (FPC) |
- Tomato FPC (AGI 2005)
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ctg4353 : [coherent], 4 members:
C10HBa0011E16, LE_HBa0053L16, LE_HBa0141G03, LE_HBa0236G08
| Marker matches - overgo what's this? |
Plausible matches
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Additional Info | ||||||||
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Conflicted matches
None
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| Marker matches - BLAST |
| Marker matches - manual |
| Physical map (from marker matches) |
| FISH map |
| FISH images |
| SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
|---|---|---|---|---|
| 455-01 1 | Composite | Fluorescence | Phase | 89.2% |
| 455-02 1 | Composite | Fluorescence | Phase | 92.3% |
| 455-05 1 | Composite | Fluorescence | Phase | 88.7% |
| 455-06 1 | Composite | Fluorescence | Phase | 91.0% |
| 455-08 1 | Composite | Fluorescence | Phase | 90.9% |
| 455-09 1 | Composite | Fluorescence | Phase | 89.7% |
| 455-10 1 | Composite | Fluorescence | Phase | 88.8% |
| 455-14 1 | Composite | Fluorescence | Phase | 89.7% |
| 455-16 1 | Composite | Fluorescence | Phase | 90.2% |
| 455-17 1 | Composite | Fluorescence | Phase | 90.0% |
| 455-18 1 | Composite | Fluorescence | Phase | 90.5% |
| 455-20a 1 | Composite | Fluorescence | Phase | 88.4% |
| 455-20b 1 | Composite | Fluorescence | Phase | 89.3% |
| 455-21 1 | Composite | Fluorescence | Phase | 89.7% |
| 455-24 1 | Composite | Fluorescence | Phase | 87.2% |
| 455-27 1 | Composite | Fluorescence | Phase | 91.9% |
| 455-28 1 | Composite | Fluorescence | Phase | 90.2% |
| 455-30 1 | Composite | Fluorescence | Phase | 89.9% |
| 455-34 1 | Composite | Fluorescence | Phase | 90.8% |
| 455-36 1 | Composite | Fluorescence | Phase | 89.6% |
| correction 2 | 60.6% | |||
| Mean±sd | 88.5%±1.2% | |||
Given an estimated length of 10.1µm for chromosome 10Q and the mean percentage above, this BAC is approximately 8.9µm±0.1µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
2The position of this BAC has been adjusted slightly to reflect its location relative to the typical position of marker BAC LE_HBa0234C10.
| IL Mapping |
| Sequencing
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This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Log in as a curator or sequencer to edit this clone's registry information.
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Sequencing Project
Chromosome 10
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HTGS phase
3 - finished
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Sequencing Status
in_progress
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Sequencing Organization
Uploaded by account 'manual'
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Full Sequence
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End Sequences
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Warnings
none
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FTP | ||
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Chromosome Assembly
this clone is not part of a chromosome assembly
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Restriction Fragments
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| Annotations
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Browse
LE_HBa0011E16 has no browsable sequence annotations
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Download
temporarily unavailable
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| User comments | [Add comment] |
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