The SOL meeting 2022 is open for registration!
Eucarpia Tomato Meeting
[April 18, 2017]
The Eucarpia Tomato Meeting will be held in Valencia, Spain, May 31 - June 3, 2022.
REGISTER FOR THE G2P-SOL COURSE
On-line course to take place Oct 11-13, 2021.
SOL Meeting 2020 has been moved to an on-line format!
Visit the sol2020 web page for viewing the recorded presentations
SOL Meeting 2020 in Thessaloniki, Greece has been postponed to 2021
Due to the current world situation, the SOL Meeting 2020 in Thessaloniki, Greece has been postponed to 2021 and will be held from Oct, 2-6, 2021, at the same location. Please stay tuned for more updates.
Famed tomato researcher Dani Zamir wins Israel Prize 2020
Prof Dani Zamir of Hebrew University has been awarded the prestigious Israel Prize for Agriculture this year! Congratulations!
SGN and BreedBase Databases Workshop at PAG 2020
Tuesday, Jan 14, 2020, 10:30 - 12:40 in East 1.
New tomato reference genome
Genomes of 13 diverse tomato accessions
Eggplant Sequencing Consortium genome release, version 3.0
Genome assembly and annotation is now available on SGN
The G2P-SOL project offers entry level training on biodiversity in breeding for potato at CIP in Peru.
SOL Meeting 2019 in Jerusalem, Israel
The SOL meeting 2019 will be held in Jerusalem, Israel, from Sept 15 - 20, 2019.
17th EUCARPIA Meeting Genetics and Breeding of Capsicum and Eggplant
September 11-13, 2019 - Avignon, France.
BLAST problem fixed
The problem with BLASTP (protein blast) that appeared recently has been fixed. We apologize for any inconvenience this problem has caused. Please let use know if there are any remaining issues. [Jan 7, 2019]
SGN GDPR compliance update
SGN was updated to comply with the new European General Data Protection Regulation (GDPR). Please let us know about any issues or concerns. [May 24, 2018]
Updated Solanum lycopersicum reference released at NCBI
Updated reference SL3.0 for Solanum lycopersicum heinz 1706 tomato genome is finally available at NCBI. Please see the release notes for details of changes. [May 2, 2018]
Eggplant genome released
The Eggplant Genome Project has released a pre-publication version of their eggplant genome (Solanum melongena) on www.eggplantgenome.org. [Oct 4, 2017]
Updated ITAG version 3.2 available!!
We have updated ITAG annotation for tomato to fix some fused gene models. The updated ITAG version 3.2 is available on JBrowse, Blast and FTP. Please use the contact form to let us know if you notice any issues with ITAG3.2. [June 15, 2017]
A new BLAST output graph is available at the SGN BLAST tool.
[April 18, 2017]
Updated ITAG version 3.1 available!!
We have updated ITAG to fix some fused gene models. The updated ITAG version 3.1 is available on JBrowse, Blast and FTP. Please use the contact form to let us know if you notice any issues with ITAG3.1. [March 3, 2017]
Updated ITAG version coming soon!
We are in the process of updating ITAG3.0 to fix some fused gene models. The updated ITAG version 3.1 will be available soon. Please use the contact form to let us know if you notice any issues with SL3.0 or ITAG3.0. [February 17, 2017]
Due to a misconfiguration, the contact form was not working in the last few days. The problem has been fixed. If you sent a message, please resend it. [February 10, 2017]
We are pleased to announce the release of version SL3.0 of the tomato genome and version ITAG3.0 of the annotation. For more information please visit tomato genome page. [February 1, 2017]
The mystery of lack of flavor in modern breeding varieties of tomatoes has been deciphered. [January 27, 2017]
Solanaceae are featured in a small movie on the Science magazine website, illustrating results from this publication. [January 23, 2017]
Remembering Prof Thomas Sims
Our great friend and colleague, Prof Thomas Sims, eminent petunia researcher, has recently died of cancer. Francesca Quattrocchio provided this brief eulogy. Our heartfelt condolences to all who knew Tom.
Solanum aethiopicum and Solanum incanum Transcriptomes.
Corrected VCF files for tomato 150 and 360 genomes
We have updated the SL2.50 VCF files for the tomato 150 and 360 genome projects with corrected ref and alt alleles for scaffolds flipped in SL2.50. We would like to thank Tomasz Kurowski and Andreu Paytuvi for reporting this error. [Sep 6, 2016]
The genomes of Petunia axillaris and Petunia inflata, the parents of Petunia hybrida, the popular bedding plant and model plant for many aspects of plant biology, have been published. [June 6, 2016]
SGN server performance
Due to a hardware issue, the SGN server was operating slower than usual for the last couple of weeks. The issue has now been fixed, and performance should be back to normal. [April 7, 2016]
New WebApollo Installation for the tomato genome
Use the SGN Tomato WebApollo to edit the tomato gene models. This tool is based on JBrowse to make easy the gene model editing.
If you are interested in fix any of the tomato gene models request the login credentials. You can login as a guest using sgn_guest and tomato as credentials [posted on Dec 8, 2015]
New SGN interface
The user interface of the SGN website has been updated to a more modern look. Please let us know what you think about the change. [Oct 7, 2015]
SGN moved to secure http protocol
The SGN site has been moved to the more secure https (secure http) protocol. Please let us know if there are any problems with this change. [Oct 5, 2015]
From the PAG 2016 Solanaceae Session Chairs
Dear SOL friends,
after several years serving as co-chairs of the Solanaceae symposium of the Plant and Animal Genome Meeting, we have passed the baton to two excellent colleagues: Shelley Jansky and Mathilde Causse, who have kindly agreed to take over the assignment. We wish Shelley and Mathilde all the best in this new role.
Thank you for making the PAG Solanaceae symposium a high quality forum for the SOL community,
Giovanni Giuliano Dave Douches
after several years serving as co-chairs of the Solanaceae symposium of the Plant and Animal Genome Meeting, we have passed the baton to two excellent colleagues: Shelley Jansky and Mathilde Causse, who have kindly agreed to take over the assignment. We wish Shelley and Mathilde all the best in this new role.
Thank you for making the PAG Solanaceae symposium a high quality forum for the SOL community,
Giovanni Giuliano Dave Douches
The SGN gene search has been updated and is now faster and more responsive. [July 15, 2015]
Nicotiana benthamiana gene models available
New Nicotiana benthamiana gene models are available in BLAST, JBrowse, and the FTP site. [March 25, 2015]
Server maintenance completed
SGN was undergoing scheduled maintenance on Friday, March 20, 2015. Thank you for your understanding. [March 20, 2015]
The Solanum tuberosum Group Phureja DM1-3 genome v4.03 is now available in the JBrowse genome viewer. [November 18, 2014]
The categories and databases have been reorganized to improve usability. Please contact us at sgn-feedback@solgenomics.net for feedback, problems and suggestions. Thanks! [October 20, 2014]
Genomic analyses provide insights into the history of tomato breeding published by Lin et al., Nature Genetics
The sequenced 360 tomato genomes are now available on the SGN Genome Browser, and for downloading [October 15, 2014]
The hot pepper genome (Mexican landrace of Capsicum annuum cv. CM334) that was sequenced by an international group of scientists from Korea, Israel and the USA is now available on SGN. [September 24, 2014]
Nicotiana tabacum genomes are now available in Blast
Nicotiana tabacum TN90, BX and K326 genomes are now available in Blast. Please report any issues here. [September 15, 2014]
The Solanum pennellii genome is now available in the JBrowse genome viewer and Blast. [September 05, 2014]
The N. benthamiana genome is now available in the JBrowse genome viewer. [August 22, 2014]
The tomato genome data is now available in the easy to use JBrowse genome viewer. [June 21, 2014]
The tomato genome assembly 2.5 with annotation ITAG2.4, is available. The scaffolds have been resized and rearranged using FISH data from Shearer et al. (2014). [June 21, 2014]
Raw data from tomato meristem methylomes (BS-seq) and meristem RNA-seq from pepper have been made available by the groups of M. Schatz and Z. Lippman at Cold Spring Harbor Lab. See the announcement here. [Mar 19, 2014]
A new, easier to use BLAST interface is available. Please let us know of if you have any problems with the interface. [Dec 16, 2013]
A tool to convert SGN unigene and TOM1 array identifiers to tomato genome identifiers is available. [Dec 16, 2013]
The 150 tomato genome consortium announces the availability of the structural variation browser for tomato and its wild relatives at: http://www.tomatogenome.net/VariantBrowser. Raw data will be made available soon via this site as well. Accept the data access agreement before usage of this data. [Oct 16, 2013]
The VIGS tool, a tool for optimizing sequences for VIGS, is now available on SGN. [Oct 1, 2013]
The The September 2013 SOL newsletter is available for download. [Sept 30, 2013]
The SolCyc server was moved to a new location and IP address. This should help resolve some of the stability problems seen with the server in the last few weeks. [July 30, 2013]
The SGN server has moved to a new location and has a new IP address. Please let us know if there are any issues that may be related to this move. [July 11, 2013]
The April 2013 Sol newsletter is available for download. [April 22, 2013]
910 phenotyped mutant lines from the TOMATOMA database in Tsukuba, Japan, are now available in SGN. [Nov 1, 2012]
The October 2012 SOL newsletter is available for download. [Oct 22, 2012]
| A first pass annotation of the Nicotiana benthamiana genes is available in the SGN BLAST tool and can be downloaded from the SGN ftp site. [Aug 22, 2012] |
| The assembly for the Nicotiana benthamiana genome is available in the SGN BLAST tool and can be downloaded from the SGN ftp site. [Aug 22, 2012] |
The The June 2012 SOL newsletter is available for download. [June 22, 2012]
| The tomato genome has been published in Nature. See special section above. [May 31, 2012] |
| A new assembly for the Nicotiana benthamiana genome is available. It is available in the SGN BLAST tool and can be downloaded from the SGN ftp site. [May 5, 2012] |
The The March 2012 SOL newsletter is available for download. [Mar 20, 2012]
| Scientists at the Boyce Thompson Institute for Plant Research (BTI) have released a draft sequence of the Nicotiana benthamiana genome which is accessible through the SGN BLAST tool and can be downloaded from the SGN ftp site. The project was funded by BTI and National Science Foundation grants IOS-1025642 and IOS-0343327. [more...] [Feb 6, 2012] |  Credit: Simon Schwizer |
Join the Plant Breeding and Genomics community of practice on Thursday April 5 at 1pm Eastern Daylight Time (GMT - 4:00) (12pm Central, 11am Mountain, 10am Pacific) to learn how to develop SNP-based tetraploid maps for potato. Register. [Mar 23, 2012]
The first-ever internet resource aimed at quickly putting basic research on crop genomes into practice, eXtension (pronounced E-extension) at www.extension.org/plant_breeding_genomics, reached the milestone of 100,000 views this month. (more...) [Dec 20, 2011]
The Lippman lab working with the laboratory of Y. Eshed at the Weizmann Institute, Israel have developed indel molecular markers for mapping purposes using S. lycopersicum and S. pimpinellifolium as parents. The indels were identified based on the filtered alignments with chromosomal physical positions, indel size and flanking sequences (300bp). 9474 indels were predicted between S. lycopersicum cv. Heinz and S. pimpinellifolium: 5503 are S. pimpinellifolium insertions and 3971 are S. pimpinellifolium deletions
Analyze for QTLs interactively and examine underlying genomic annotations. [Sept 07, 2011]
The The October 2011 SOL newsletter is available for download. [Oct 20, 2011]
The African SOL project, AFRI-SOL, has been formed with a focus on African Solanaceous plants and information sharing between researchers. [August 15, 2011]
SGN is now carrying a mirror of the potato genome assemblies and annotations recently released by the PGSC. [August 2, 2011]
The potato genome has been published in Nature by an international consortium of scientists. [July 15, 2011]
The SOL newsletter for June 2011 is available for download . [June 20, 2011]
A consensus map showing the QTL positions for late blight resistance and maturity traits is now available, kindly provided by S. Danan and V. Lefebvre and collegues from INRA Avignon, France. [June 1, 2011]
The ITAG2.3 tomato genome annotation, based on assembly v2.40 has been released and is available in the SGN genome browser, in SGN BLAST, and for bulk download. [April 29, 2010]
478 tomato accessions scored for 52 distinct phenotypes in 459 field plots.
More phenotypes, SNP genotypes, and potato data from SolCAP will be available soon. [March 28, 2011]
The SOL newsletter for March 2011 is available for download.
The research groups of Michael C. Schatz and Zachary B. Lippman at Cold Spring Harbor Laboratory in New York have generated transcriptome sequences of the green-fruited wild tomato species Solanum peruvianum.
These datasets also can be accessed by BLAST
[March 17, 2011]
The eXtension knowledge environment was released at an event at the PAG conference. eXtension includes tutorials for SGN tools produced by the SolCAP project. [January 31, 2011]
Three summer internship positions are available at SGN. Please use the application forms provided.
[January 31, 2011]
Three new maps have been added to SGN: The maps of two Nicotiana species (1, 2), and a tomato map. Many thanks to the submitters, Feinan Wu, David Francis and their colleagues for making the maps available.
[January 6, 2011]
The program of the Solanaceae session at the Plant and Animal Genome meeting (Tuesday, Jan 18) is now public. Due to the high number of excellent abstracts received, the session has been extended. It will feature 9 talks on different Solanaceae genome topics.
Looking forward to meeting you in San Diego!
Giovanni Giuliano and Dave Douches, Session Chairs [November 9, 2010]
Looking forward to meeting you in San Diego!
Giovanni Giuliano and Dave Douches, Session Chairs [November 9, 2010]
The SOL newsletter for October 2010 is available for download .
The Solanaceae workshop at the upcoming PAG 2011 meeting is seeking abstracts, submissions are due September 30, 2010. [September 13, 2010]
A list of 100 species proposed to be sequenced by the SOL-100 project is available. [September 7, 2010]
The International Tomato Genome Sequencing Project has released a new version (2.30) of the Solanum lycopersicum genome assembly. [August 9, 2010]
The International Tomato Genome Sequencing Project has released a new version (2.10) of the Solanum lycopersicum genome assembly. [June 25, 2010]
The SOL newsletter for June 2010 is available.
Phenom Networks is a web-based engine for knowledge representation of complex phenotypes. [May 28, 2010]
The International Tomato Genome Sequencing Project has released a new version (1.50) of the Solanum lycopersicum genome assembly. [May 16, 2010]
All SGN open source code is now freely available from github.com/solgenomics, which makes it easy for developers to share code. [May 3, 2010]
The Kazusa DNA Research Center has released 13,227 full length cDNA sequences for tomato Micro-Tom. [April 2, 2010]
A new tomato genome build is available based on the CABOG assembler, in SGN BLAST and FTP.
[March 26, 2009]
SGN hosts a collection of eggplant landraces and closely-related species. Contributed by Rachel Meyer from the New York Botanical Garden.
[March 26, 2009]
The SOL newsletter for March 2010 is available from SGN.
[March 16, 2009]
SGN releases a beta version of an expression database populated with the Nicotiana expression atlas (TobEA). [Mar 9, 2010]
The ITAG tomato genome annotation, based on assembly v1.00 has been released and is available in the SGN genome browser and in SGN BLAST. [Feb 25, 2010]
An SGN mirror site is available at Wageningen University (http://solgenomics.wur.nl), hosted by Dr. Richard Finkers. [Jan 22, 2010]
Summer Internships at SGN
Summer internships are available at SGN for undergraduate students. Applications are due March 15. [Jan 20, 2010]
A prerelease of the tomato shotgun genome sequence is available for BLAST and download (FTP). [December 1, 2009]
The SOL2009 was a great success. Photos and final abstract book are now available on the conference site. [November 28, 2009]
The LycoCyc pathway genome database, part of the SolCyc databases, has been updated to the latest unigene build for tomato. [October 30, 2009]
A new SNaPshot physical map is available on SGN. This map was generated at the Arizona Genomics Institute with funding provided by the NSF. Read the full announcement. [October 30, 2009]
SGN is featured in a blog on the bioinformatics training site OpenHelix as the tip of the week. [October 29, 2009]
SGN can now be reached under the new domain name http://solgenomics.net. Requests to http://sgn.cornell.edu/ get forwarded to the new domain name. [October 13, 2009]
The Potato Genome Sequencing Consortium has released the first draft sequence of the potato genome, available at www.potatogenome.net. [September 23, 2009]
More than 400 accessions were phenotyped by EUSOL, using the Solanaceae Phenotype ontology, and are now available at SGN, with cross-links to the EUSOL website. This data was kindly contributed by Dr. Richard Finkers.
[September 22, 2009]
The SOL newsletter for September 2009 is available from SGN.
[September 17, 2009]
BAC end and BAC sequence data from the Potato Genome Sequencing Consortium available on the SGN FTP and SGN BLAST servers [Sep 15, 2009].
SGN has released a new in-silico PCR tool for Solanaceae sequence datasets [Aug 26, 2009]
The SOL newsletter for June 2009 is available from SGN.
[June 10, 2009]
A new SGN unigene build for tomato species is available. [May 1, 2009]
A new tomato map, kindly provided by José M. Jiménez-Gómez, is available on SGN.
[March 17, 2009]
The SOL newsletter for March 2009 is available from SGN.
[March 6, 2009]
The Phenom Network engine by Dani Zamir and Yaniv Semel represents knowledge of complex traits and has tomato
ILs, barley and rose traits with more organisms being added soon.
[February 28, 2009]
SGN now allows QTL analyses to be run on populations and traits in the database
[February 12, 2009]
Plant MetGenMAP is a web-based analysis package for integrating omics-type datasets with various biological information. It was developed by Dr. Zhangjun Fei's group at BTI.
[January 27, 2009]
New COSII-based pepper and eggplant maps are available on SGN, kindly provided by Dr. Feinan Wu.
[December 5, 2008]
The USDA-funded SolCAP program has started (more information on http://solcap.msu.edu).
[November 12, 2008]
The EU-SOL funded tomato core collection phenotype database is now available at https://www.eu-sol.wur.nl/.
[November 12, 2008]
Giorgio Valle's lab has sequenced 100,000 fosmid ends and made them available on SGN.
[October 23, 2008]
Fernando Carrari's lab has released a first draft of the mitochondrial genome sequence.
[October 12, 2008]
SGN has added 628 pepper EMS mutants to the phenotype database. This population was generated and phenotyped at the lab of Ilan Paran, Volcani ARO, Israel.
[September 12, 2008]
SGN has added 1528 tobacco locus identifiers to the locus database.
[September, 2008]
The SOL newsletter for August 2008 is available from SGN.
[August 14, 2008]
SGN has released a new, AJAX-based ontology browser.
[Aug 10, 2008]
The Tomato Functional Genomics Database integrates and expands several databases by Dr. Zhangjun Fei's group at BTI, including the Tomato Expression DB, the Tomato Metabolite DB, as well as the Tomato Small RNA DB. See ted.bti.cornell.edu
[July 22, 2008]
The SOL newsletter for March 2008 is available from SGN.
[May 15, 2008]
The website of the EU-SOL, an integrated project funded by the European Commission Framework program, was launched.
[March 29, 2008]
SGN is now hosted at the Boyce Thompson Institute (BTI)
The SGN database group moved from Cornell to the Boyce Thompson Institute (BTI) in June, 2008.
[June 10, 2008]
[June 10, 2008]
The SOL newsletter for March 2008 is available from SGN.
[Mar 11, 2008]
100,000 fosmid ends were sequenced by the Sanger Centre, UK, and added to the SGN clone database (library SL_F).
[Mar 4, 2008]
[Mar 4, 2008]
Eight new populations, comprising 1130 individuals, with descriptions, trait data, genotypes, and 1800 images, were kindly submitted by Esther van der Knaap.
[Mar 4, 2008]
[Mar 4, 2008]
The SOL newsletter for November 2007 is available. [Nov 20, 2007]
Syngenta released a new version of the BAC mapping file to the international tomato genome sequencing community (see FTP site).
[Nov 8, 2007]
Prof Sanwen Huang announced at the 4th SOL conference in Jeju, Korea, that his group at the Chinese Academy of Agricultural Sciences will sequence chromosome 11 of tomato.
[Sept 17, 2007]
The Accessioned Golden Path map, showing the projected locations of BACs in the tiling path is available. [Sept 4, 2007]
The SOL newsletter for July 2007 is available. [July 15, 2007]
SGN has several open positions for postdocs, programmers and a system administrator. Contact SGN for more information. [June 13, 2007]
Several new tomato maps, such as the IL map, a Contig map, as well as an improved Physical map were added to SGN. [June 13, 2007]
The Japanese SOL project (JSOL) contributed a special issue related to progress on tomato and Solanaceae genomics in the official journal of the Japanese Society of Plant Cell and Molecular Biology. [May 14, 2007]
The SOL newsletter for May 2007 is available. [May 7, 2007]
An new advanced BLAST interface is available on SGN with better control of BLAST parameters and submission of multi-fasta files. [May 2, 2007]
Improved versions of the SGN Alignment Analyzer and the SGN Tree Browser released. [April 4, 2007]
New, detailed instructions for validation of BACs on ILs [ppt] are available, and the Tomato Sequencing guidelines [google doc] have been updated with new finishing guidelines. [March 29, 2007]
An SSR-based map of tobacco, developed and kindly provided by G. Bindler, P. Donini and co-workers has been added to SGN. [March 28, 2007]
Syngenta mapped 17,000 BACs to ILs and is making the data available to the Tomato Sequencing project on SGN. [Feb 28, 2007]
The SOL newsletter for March 2007 is available. [March 15, 2007]
Many thanks to everybody for their support on
the proposal [pdf] to sequence Solanum pennellii. [Mar 11, 2007]
A letter of intent has been approved by JGI for full proposal submission. Please support the project with a support letter [Draft support letter]. [Feb 7, 2007]
The SOL newsletter for January 2007 is available. [Jan 10, 2007]
1000 potato loci, including Gene Ontology and Plant Ontology annotations, have been added, complementing the 1600 tomato loci already in the SGN database. [Jan 9, 2007]
A new database of populations, individuals, phenotypes and genotypes is available on SGN, including 8000 images. [Jan 9, 2007]
An SGN mirror site has been installed at the Colombian National Coffee Research Center in Chinchina, Colombia. [Dec 5, 2006]
The SOL Newsletter for Nov 2006 is available [Nov 9, 2006].
A new SGN unigene build for tomato, Solanum lycopersicum is available. [Oct 1, 2006]
The website for the European SOL project (EU-SOL) is now on-line [Sept 19, 2006].
The SOL Newsletter for Sept 2006 is available [Sept 13, 2006].
A BAC extension tool for the tomato sequencing project is available from the University of Padua [July 30, 2006].
A database of Solanaceae genetic loci that can be updated by community members like you [July 19, 2006].
A preliminary version of the SolCyc biochemical pathway databases is available [July 19, 2006]
The June 2006 edition of the SOL Newsletter is available [June 2, 2006]
The April 2006 edition of the SOL Newsletter is available.
The tomato plastid sequence has been completed by the EU-funded Plastomics Consortium [Mar 9, 2006]
A web portal for the Latin American SOL initiative (Lat-SOL) has been launched [Feb 21, 2006]
The SOL Newsletter for February 2006 is now available. [Feb 14, 2006]
Coffee ESTs are now available on SGN [Nov 7, 2005]
The SOL Newsletter for November is now available [Nov 7, 2005]
We've created a forum for public discussions, job listings, etc.
It's brand new and still under development, so feel free to try it out and let us know if you have any problems.
Log in
to contribute.
10,000 probes representing 9254 transcripts.
New Toolbar Menu
We have updated and simplified the design of our
site-wide menu bar that appears at the top of every
page. Links to some pages have been moved to the
Getting Started area on the left side of the
SGN front page.
We would love to hear any comments you may have about the new design! Just email us.
New BAC Search
New BAC search features are available, with a first
set of search criteria, currently searching 249,880
high-quality BAC end sequences from 173,184 BACs from
three tomato genomic libraries (HindIII, MboI, and EcoRI).
Public Tomato SNP Consortium The California Tomato Research Institute, Inc. (CTRI) would like to announce the formation of the Tomato Public SNP Consortium to facilitate more rapid development of single nucleotide polymorphisms (SNPs) predicted at USDA-ARS PGRU.
New
Marker Search Nov, 2004
A powerful and user-friendly new marker search is now
available. Markers can be searched by name, position,
chromosome, map, species, marker type, and more.
Guide to
revised Solanum nomenclature Oct, 2004
Lycopersicon has been (re-)integrated into Solanum. Short guide
to the revised nomenclature, courtesy of Sandra Knapp, Natural
History Museum, London, UK.
New
Comparative Mapviewer Aug, 2004
A new comparative mapviewer is available on SGN that allows to
compare all the maps that can be viewed with the traditional
mapviewer, but in a comparative mode. The marker pages have
also been updated and present all the information on one
page.
New SNU2 pepper map
Aug, 2004
A new pepper map, SNU2, is
available on SGN. The map was submitted by Prof Kim of the
Seoul National Univeristy in Korea.
Updated
Physical Map Jun, 2004
A total of 11
Overgo Plates have now been loaded. Overall, 4,908 BAC's
are now anchored to the F2.2000 genetic map. Additionally, we
have added an Overgo
Plate browser and an explanation
page describing the Overgo Plating process.
SOL
Forum mailing list Apr, 2004
A new mailing list for the Solanaceae community where list
members can post messages. Subscribe.
Updated
Physical Map Apr, 2004
Four more Overgo Plates have
been added to our collection. There are now a total of 3,999 BAC's
anchored to the F2.2000 genetic map.
New EST Data
Available Feb, 2004
20,738 Pepper
ESTs, courtesy of Dr. Doil Choi - KRIBB; 11,500 Petunia
ESTs, courtesy of Dr. David Clark Univ. of Florida and SGN; 3,000
Eggplant
ESTs provided by SGN.
Petunia data
added Feb, 2004
11,500 petunia ESTs kindly provided by Dave Clarke of the
University of Florida were
added and a unigene set built.
Eggplant data
added Feb, 2004
Over 3000 eggplant ESTs were added. The sequences were kindly
provided by Cornell
University.
New SGN features Feb, 2004
New features added recently include an improved user-interface
with pull-down menus, a quick search, a library search, and an
FTP site.
Mutants
Database Updated Nov, 2003
Now includes 3500 tomato monogenic mutants collected in Summer
2003
Full Text
Search Oct, 2003
Keyword search of all unigene annotations, both manual and
automated
BAC
Physical Mapping Sept, 2003
Overgo based BAC anchoring to the F2-2000 tomato genetic
map
Real Time
QTL Aug, 2003
A tool for the analysis of complex phenotypes
Lycopersicon Combined Unigene Build Series
Incorporation of ESTs derived from Lycopersicon hirsutum, Lycopersion pennellii, and Lycopersion esculentum cDNA libraries constructed at Cornell University.