Solanum lycopersicum mRNA Solyc12g088670.1.1

mRNA details  
Name
Solyc12g088670.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc12g088670.1.1
Length
1,401
  
Description
Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site IPR000668 Peptidase C1A, papain C-terminal
Location(s)
SL2.50ch12:63949590..63953361
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006508
  • GO:0008234
Length
3772
Nb exon
5
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc12g088670.1.1 Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site IPR000668 Peptidase C1A, papain C-terminal

ATGGCAGCTCACAGCTCAACTCTCACCATATCCATACTTCTCATGCTCATCTTCTCCACCTTATCCTCTGCTTCCGATATGTCAATTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAACTTGAGATACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGAACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAATTGACTGGAGAGAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCACTGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAGGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATTAAGAATGGAGGAATCGACACTGAAGAAGACTACCCTTACAAAGAACGCAATGGCGTATGTGATCAATATAGGAAAAATGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGTTGCAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCACTTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTCACTGGAAAATGTGGTACTGCAGTGGATCATGGTGTAGTTATTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCGTTAGGAACTCATGGGGAGCTAACTGGGGAGAGAACGGCTACCTCAGAGTCCAGCGTAACGTTGCCAGCTCTAGTGGCTTGTGTGGTTTAGCCATAGAGCCTTCATATCCAGTAAAAACAGGACCAAATCCTCCTAAACCCGCTCCATCTCCTCCATCTCCGGTCAAGCCACCTACAGAGTGTGATGAATATTCTCAATGCGCTGTCGGCACCACTTGCTGCTGTATCCTTCAGTTCCGTAGGTCTTGCTTCTCTTGGGGATGCTGCCCACTTGAAGGAGCCACTTGCTGTGAAGACCACTACAGTTGCTGCCCACACGACTATCCTATCTGCAATGTTCGTCAAGGAACATGCTCAATGAGCAAGGGCAACCCACTGGGAGTGAAGGCAATGAAGCGCATTCTTGCACAACCTATTGGGGCCTTCGGAAATGGAGGAAAGAAGAGCAGTTCTTGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc12g088670.1.1SL2.50ch12:63949589..63953361467-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc12g088670.1SL2.50ch12:63949590..639533613,772-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc12g088670.1.1.1SL2.50ch12:63952884..63953361478-n/a
exonexon:Solyc12g088670.1.1.2SL2.50ch12:63950653..63950888236-2
exonexon:Solyc12g088670.1.1.3SL2.50ch12:63950415..63950555141-n/a
exonexon:Solyc12g088670.1.1.4SL2.50ch12:63949772..63950221450-n/a
exonexon:Solyc12g088670.1.1.5SL2.50ch12:63949590..6394968596-n/a
intronintron:Solyc12g088670.1.1.2SL2.50ch12:63950889..63952883n/a-n/a
intronintron:Solyc12g088670.1.1.3SL2.50ch12:63950556..63950652n/a-n/a
intronintron:Solyc12g088670.1.1.4SL2.50ch12:63950222..63950414n/a-n/a
intronintron:Solyc12g088670.1.1.5SL2.50ch12:63949686..63949771n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F18010036%2Fdetails feature 18010036
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