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Solanum lycopersicum mRNA Solyc12g056340.1.1

mRNA details  
Name
Solyc12g056340.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc12g056340.1.1
Length
2,418
  
Description
ATP-dependent RNA helicase (AHRD V1 *-*- A3RR99_RALSO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch12:62297673..62303549
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
5877
Nb exon
10
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc12g056340.1.1 ATP-dependent RNA helicase (AHRD V1 *-*- A3RR99_RALSO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

ATGGGCGGCGGTCCCCGTACTTTCCCCGGCGGTCTCAACAAATGGCAATGGAAGCGCCTCCACGAGAAGAAAGCTCGGGACAAGGAAAACCGGCTCCTTGATCAAGAGAAACAGCTTTATCAGGCTCGAATCCGATCTCAAATCCGAGCTAAACTCACTTCTTCCGGTGAACAATCCGATTTTAGCAATGAACAACAGCCTAATTATAGCCCTGTTTCACCACAAGACCATATTAGAGGTCTAGCTGATCGGTTCATGAAGGAAGGTGCTGAGGATTTGTGGAATGAAGATGATGGACCGGTTAATACTCCACAGATAAATCAACAAAGCGGAGGTATTAGTGAGTCAATTGATTTGCGCAAATTGAGAGATACTAAGTTTAATGATGTTCCTCGAAGTTATAGTTTTCAGAAAGCTAGAAATTTTTGTACGAATATTAGTGATGTTTTCGCTGAAAATTGTAGAACTAGAAATCCAACTTTTTCGGATAGTTGGTCAAGACAGAACAAGTTTTTAATGTTTGGATGGAGGTTGGTTAATATTGAGAATAGAAATGTGAATAATTTGAATGGATTTTTGAATTATAGATGCTACTCAGTAGATAGGATGAATGGGAATAAGTTGAGGAAATTGGATTTTACTAGAAATGAGAGTTCGCAAAGTGAGGATAAATTGAGATCAGTGGGATTGGTGGTGAAGGGTGAGCGAAAAGCAAAATGGCCGAGGTTTAGACCGAAACCTGAGGAGTCAACTGATGAAGACGATGACGAAGATACTGAGGTGGATGAGGACGAGGAGGAAAGACGGAGTAGAGGGAGTGTGAAGATGATGAGTAGTGCTGCTCTAGGGAAGTATGATATGAAGACAAAGAAGAGAGTTCCATTGAAGTTTGTGGAAGATGAAGATGATTTATCACTGCATGTCGCGGCGATAAGGAAGGAGGTTAAAGGGCGGAGTATGCAGAAAATTGAAACCGAAGAAGACGAGAAGGAAACAATACTTAGCTCTAAAAGGTTTGATGAATATGATGTATCTCCTTTGACAGTCAAGGCCCTTACTGCAGCAGGTTATGTGCAAATGACTAAAGTGCAAGAGGCAACACTTTCTACTTGTCTTGAGGGAAAGGATGCTTTAGTTAAAGCAAGGACAGGCACAGGCAAAAGTGCTGCATTTTTGCTTCCAGCCATTGAAACAGTTCTGAAGGCCTCACGTAAAAAGAGTGCCCAAAGGGTCCCGCCAATAGATGTACTCATTCTCTGTCCCACGCGAGAACTTGCTAGTCAGATAGCTGCTGAAGCTAATGTGTTGTTAAAGTACCATGAAGGCATTGGTGTGCAGACACTAGTTGGAGGGACAAGGTTCAAAGAAGATCAGAAACGCCTAGAGTGTGATCCATGCCAGATTATAGTTGCAACACCTGGTAGATTATTAGATCACATTGAGAACAAGTCTGGCTTCTCTACACGAATAATGGGATTGAAGATGTTAATACTTGATGAAGCTGACCACTTACTGGACCTTGGGTTCCGGAAAGACATAGAGAAACTTGTTGATTGCTTGCCTCGACGAAGGCAGTCCCTACTCTTTTCAGCTACTGTCCCAAAGGAGGTTCGTCGCATATCTCAACTTGTTCTGAAAAGAGAATATGACTATGTTGATACAGTGGGCCTTGGACTGGAAACAAATCCAAAGGTTAAGCAATTTTATCTAGTTGCACCGCATGAACAACACTTTCAAGTTGTGCACCATCTTTTGTCAAGCCATATCTCAGAAGTGCCTGATTACAAGGTCATTGTTTTTTGTACAACAGCTATGATGACATCCCTCATGTTTTCCCTTTTCCATGAGATGAAAATGAATGTGAGAGAGATCCATTCCAGAAAACCTCAACTTTATCGTACTCGAATCTCTGATGAATTCAAGGAAACGAAACGTGTAATTCTTATAACCTCTGATGTGTCAGCTCGGGGGATGAATTATCCTGATGTTACACTTGTTATTCAGGTTGGTCTTCCTGTTGATCGAGAGCAGTATATACACCGGCTTGGAAGAACTGGGCGAGAAGGCAAAGAAGGAGAAGGTATCCTGTTGCTTGCACCTTGGGAACAATATTTCTTGGATGACATAAAAGACCTCCCCATGGAAAACTGGCCAGTTCCACGTCTTGATCCTCGTGTTAAAGTCAAGATGGAAGAAGCAATGGAAAAGATGGATACTAGTGTCAAAGAATCAGCTTATCACGCTTGGCTTGGTTATTACAACTCGGTAAGGGAAGTAGGCAGAGACAAGACAACACTTGTCGAGTTAGCTAACCAGTTTAGCGAGTCTATTGGTTTGGACAAGCCTCCTTCACTGTTCCGTAGAACAGCTCTAAAGATGGGATTGAAAGATATTCCTGGCATCCGAATACGTAAGTAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc12g056340.1.1SL2.50ch12:62297672..62303549806+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc12g056340.1SL2.50ch12:62297673..623035495,877+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc12g056340.1.1.1SL2.50ch12:62297673..622986851,013+n/a
exonexon:Solyc12g056340.1.1.10SL2.50ch12:62303319..62303549231+n/a
exonexon:Solyc12g056340.1.1.2SL2.50ch12:62298776..62298882107+1
exonexon:Solyc12g056340.1.1.3SL2.50ch12:62299143..6229919856+2
exonexon:Solyc12g056340.1.1.4SL2.50ch12:62299292..62299516225+n/a
exonexon:Solyc12g056340.1.1.5SL2.50ch12:62301095..62301301207+n/a
exonexon:Solyc12g056340.1.1.6SL2.50ch12:62301516..6230159984+n/a
exonexon:Solyc12g056340.1.1.7SL2.50ch12:62301764..6230185996+n/a
exonexon:Solyc12g056340.1.1.8SL2.50ch12:62301994..62302209216+n/a
exonexon:Solyc12g056340.1.1.9SL2.50ch12:62302725..62302907183+n/a
intronintron:Solyc12g056340.1.1.1SL2.50ch12:62298686..62298775n/a+n/a
intronintron:Solyc12g056340.1.1.2SL2.50ch12:62298883..62299142n/a+n/a
intronintron:Solyc12g056340.1.1.3SL2.50ch12:62299199..62299291n/a+n/a
intronintron:Solyc12g056340.1.1.4SL2.50ch12:62299517..62301094n/a+n/a
intronintron:Solyc12g056340.1.1.5SL2.50ch12:62301302..62301515n/a+n/a
intronintron:Solyc12g056340.1.1.6SL2.50ch12:62301600..62301763n/a+n/a
intronintron:Solyc12g056340.1.1.7SL2.50ch12:62301860..62301993n/a+n/a
intronintron:Solyc12g056340.1.1.8SL2.50ch12:62302210..62302724n/a+n/a
intronintron:Solyc12g056340.1.1.9SL2.50ch12:62302908..62303318n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F18007056%2Fdetails feature 18007056
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