Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Solanum lycopersicum mRNA Solyc11g069190.1.1

mRNA details  
Name
Solyc11g069190.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc11g069190.1.1
Length
2,436
  
Description
Auxin response factor 4 (AHRD V1 **** Q2LAI9_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3
Location(s)
SL2.50ch11:53817628..53826053
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0046983
  • GO:0006355
Length
8426
Nb exon
12
Sifter term
GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc11g069190.1.1 Auxin response factor 4 (AHRD V1 **** Q2LAI9_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3

ATGGAAATTGATCTGAATCATGCATTAGTGAGTGAAGTGGAGAAGAATGTATGTTGTAATGAAGAATGTGATAAAGGGGGTGGTGGGGGTTGTGTTAATTGCTCTTTGTACACTTCCACTACTTCTTCTTGTTCTTCAAATGTATCTTCATCTTCTTCACTTGCTCTTACCTCAATTTATAAAGAGCTTTGGCATGCTTGTGCTGGTCCTCTTACTAGTTTACCCAAGAAAGGAAATGTAGTGGTTTATTTCCCTCAAGGTCATATGGAAGAAGCTGTTTCTGCTTTTCCATTTTCACCTGTCAAGATTGATTTACCAACTTTTGGTCTTCAGCCTCAGATCTTCTGTAGAGTGGAAGATGTCCAATTGCTTGCAAATAAGGAAAATGATGAGGTGTATACACAGCTCACTCTTCTTCCTCTTCCAGAGTCAATGGCTATAAGCTTAGAGGGGAAAGAACATGAAGATTCGGGGACGGATGAGGAAGGGAATGGAGTCAATCCAGGGAAATCAGCTTCTCACATGTTCTGTAAAACGCTGACTGCTTCGGATACCACCACCCATGGTGGCTTTTCAGTTCCCCGTCGAGCAGCTGAAGACTGCTTCCCCCCTCTGGATTACAAAGAGCAAAGACCCTCACAGGAGCTAATTGCTAAGGATCTGCACGGAGTAGAGTGGAAATTTCGTCACATTTATAGAGGCCAGCCAAGGCGACATTTGCTCACTACTGGATGGAGTATCTTTGTCAGCCAAAAGAATCTTGTCTCAGGGGATGCAGTTCTCTTCTTGAGGGGAGAAGGTGGAAATCTCAGACTGGGAATAAGAAGAGCTGCAAGACCTAGAAATGGGCTTCCTGAATCGATAATCAAAAGTCAATATTCTGGACCGGATGTTCTTTCGTCAGTTGCTACAGCCCTATCAGCAAAGAGCACTTTCCATGTTTTCTATAGCCCAAGGGCAAGTCATGCTGATTTCGTTGTACCTTACCAAAAGTACGTGAAAGCCATCAACTCTCGGATTCCTGTTGGGACAAGATTTAAAATGAAATTTGATTTGGATGATTCACCTGAAAGAAGGTACAGCGGTGTAGTGACTGGGATAAGCGATATGGATCCCTTTAGATGGCCCAACTCTAAATGGAGATGCTTGATGGTCAGATGGGATGAAGATATAATGAGTAATCATCAGGAACGGGTTTCTCCTTGGGAAATTGATTCTTCAGTTTCCTTACCACCACTGAGCATTCAGTCCTCACCAAGACTGAAGAAACTGCGGACTAGTCAGCAGGCACCATCAGTACTGGACAGCCATTTTGCTGGAGGGAGTGCTCTTTTAGACTTTGAGGAGTCAATAAGATCCTCCAAGGTCTTGCAAGGTCAAGAAAATTTAGGTCTGATATCACCTCCCTATGGTTGTGATAAACCAGTCCGCCCACTGGATTTCGAGCTGCAAAGAGTAGCTCGTCACAATCTCATGCCAAATGGTGTAGAGAACATTATTGTTGGTGACTTTGTGAAAACTCAGCCTCCAACAACCTACACAGGCTTTCTGGAATCCAATAGGTTTCCAAAGGTCTTGCAAGGTCAAGAAATTTGCTCGTTGAGATCCCTTACTGGAAAAGGTGATGTTAATTTTGGTGCTTGGGGAAAACCTGAATTTGGTTGCAATGTTTTCGGCACATATCAGAGGCCGAGAGCCAATTTCTATCCTCTCGCTTCTGAAGGGGCGAGGAATGTGTTTTTACCTTACAATGCGATGTATAGAGCTGGACAAGATCCCGTGGTTCCCTCCTACAGTACTAATTTCCAAAGAGAAAATCCTACCTTGAACCAGAATTCAATCCAAAATGTGGTTAGGAGGGAAGAAGTTGGAATGCCAAAGTTTGTAAATGAGCAGAGGCCACCGGAGATGTCTAAAGTGTCCATTCCAGAGAACCATTTCAAGAATGAAAATGACGACTCCTTCAATGCACAGGCTCCATGTAAACTGTTTGGCTTTTCCTTGACGAAAGAACCATCTACTCCTAGCTCGCAGAGTTCTGGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGCAGCTTGGTTGGACGAGCCATTGATCTCTCGAGATTGAATGGCTATGACGACTTGCTGGTTGAGTTGGAGAGGCTTTTCAACATGGAAGACCTCTTAAGAGATCCCAACAAGGGGTGGCGAATCTTGTACACTGACAGTGAGAATGACATGATGGTTGTCGGAGATGATCCATGGCATGAGTTCTGTGAGGTAGTATCCAAGATCCATATATACACTCAAGAAGAAGTGGAGAAAATGACTATTGAGGGGATCAGCGATGACACTCAAAGTTGTTTGGAGGAGGCACCAGCAATCATGGATGTCTCAAAGTCTTCTTCAGTTGGCCAGCCTGATTCATCTCCAACTGTAATCAGGATTTGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc11g069190.1.1SL2.50ch11:53817627..53826053812-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc11g069190.1SL2.50ch11:53817628..538260538,426-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc11g069190.1.1.1SL2.50ch11:53825682..53826053372-n/a
exonexon:Solyc11g069190.1.1.10SL2.50ch11:53818978..53819720743-2
exonexon:Solyc11g069190.1.1.11SL2.50ch11:53818703..53818893191-n/a
exonexon:Solyc11g069190.1.1.12SL2.50ch11:53817628..53817811184-1
exonexon:Solyc11g069190.1.1.2SL2.50ch11:53825520..5382557657-n/a
exonexon:Solyc11g069190.1.1.3SL2.50ch11:53824949..53825134186-n/a
exonexon:Solyc11g069190.1.1.4SL2.50ch11:53824761..5382484585-n/a
exonexon:Solyc11g069190.1.1.5SL2.50ch11:53824604..5382469491-2
exonexon:Solyc11g069190.1.1.6SL2.50ch11:53823628..53823792165-1
exonexon:Solyc11g069190.1.1.7SL2.50ch11:53821171..53821290120-1
exonexon:Solyc11g069190.1.1.8SL2.50ch11:53821006..5382108176-1
exonexon:Solyc11g069190.1.1.9SL2.50ch11:53819977..53820142166-n/a
intronintron:Solyc11g069190.1.1.10SL2.50ch11:53819721..53819976n/a-n/a
intronintron:Solyc11g069190.1.1.11SL2.50ch11:53818894..53818977n/a-n/a
intronintron:Solyc11g069190.1.1.12SL2.50ch11:53817812..53818702n/a-n/a
intronintron:Solyc11g069190.1.1.2SL2.50ch11:53825577..53825681n/a-n/a
intronintron:Solyc11g069190.1.1.3SL2.50ch11:53825135..53825519n/a-n/a
intronintron:Solyc11g069190.1.1.4SL2.50ch11:53824846..53824948n/a-n/a
intronintron:Solyc11g069190.1.1.5SL2.50ch11:53824695..53824760n/a-n/a
intronintron:Solyc11g069190.1.1.6SL2.50ch11:53823793..53824603n/a-n/a
intronintron:Solyc11g069190.1.1.7SL2.50ch11:53821291..53823627n/a-n/a
intronintron:Solyc11g069190.1.1.8SL2.50ch11:53821082..53821170n/a-n/a
intronintron:Solyc11g069190.1.1.9SL2.50ch11:53820143..53821005n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17986872%2Fdetails feature 17986872
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)