Solanum lycopersicum mRNA Solyc11g030600.2.1

mRNA details  
Name
Solyc11g030600.2.1
Type
mRNA
Length
4,776
Organism
Solanum lycopersicum
Description
DNA (Cytosine-5)-methyltransferase (AHRD V1 **** O49889_SOLLC); contains Interpro domain(s) IPR017198 DNA (cytosine-5)-methyltransferase 1
Location(s)
SL2.50ch11:22206221..22222608
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0006306
  • GO:0003677
Length
16388
Nb exon
12
Sifter term
GO:0008168
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc11g030600.2.1 DNA (Cytosine-5)-methyltransferase (AHRD V1 **** O49889_SOLLC); contains Interpro domain(s) IPR017198 DNA (cytosine-5)-methyltransferase 1

ATGGCGTCACCCCAACCTAATTCGGAGTCGGTATTAGAACTTCCGAACAACGACAAATCTGGACACAAAAAGAACAAACGCAAACAAGATTCTGTGTCAAAAAGGAAGGCATCTGCAACTGGTAAGAAGGAAAAGAAACAGGCTGTTTCTGAAACTATTGAGGAGCCCACTGCTGGACGTAAAAGGCCTAAGCGAGCTGCTGCCTGTTCAGATTTTAAAGAGAAATCTGTGCATTTATCAAAAAAGTCTTCAGTCATTGAAACAAAGAAGGACCATTGTGTAGACGAAGAGGATGTAGCTATTAGGTTAACTGCGGGTCTGCAAGAGTCTCAACGACCCTGTAGAAGATTAACGGATTTTGTTTTTCATAACTCAGAAGGAATACCACAACCGTTTGGAATGTCTGAGGTTGATGATCTGTTTATCAGTGGCCTCATTTTACCACTTGAGGACAGTCTTGACAAAGTAAAAGCAAAAGGAATTAGATGTGAAGGCTTTGGGCGTATTGAAGAATGGGCTATCTCTGGCTATGAAGATGGAACTCCTGTCATATGGATCTCAACTGAGACAGCTGATTATGATTGTTTAAAACCCTCAGGTAGTTATAAGAAGTTTTATGACCACTTCTTGGCCAAGGCGACGGCTTGCGTTGAGGTTTATAAGAAGCTTTCAAAGTCATCTGGAGGGAATCCTGATTTAAGTCTTGACGAGTTGCTTGCAGGGGTTGTCCGAGCGATGACTGGCATAAAATGCTTTTCAGGTGGAGTATCCATCAGGGACTTTGTCATCACTCAGGGCGGGTTCATATATAAGGAACTTATTGGTCTGGATGATACATCAAAGAAGACTGATCAACTTTTTGTTGAGCTACCTGTCCTAGCTTCCCTTAGAGATGAAAGCAGCAAGCACGAGACACTTGCACAACCAGAGACTATATCATCTGGTAATGGTCTACGTATTGGCCCAAAAGCAGGAAATGGAGGAGACAAGATAGTTGAATCTGGTTTGGCCAATGGTCCAGCGCCAGAAGATGAAGATCTAAAATTGGCTAAATTGTTGCATGAAGAGGAGTATTGGTGCTCCTTGAAGCAGAAGAAAGACCGTAATACATCTTCCTCATCCAGCAAAATATACATCAAGATCAATGAGGATGAGATTGCAAGTGATTATCCTTTACCTGCATATTACAAAACATCTAATGAAGAGACTGATGAGTATATTGTCTTTGACAGTGGGGTTGAAACATACCATATTGATGAGTTGCCTCGCAGCATGCTTCATAATTGGGCATTATACAACTCGGACTCAAGGCTAATATCTTTAGAACTGCTGCCAATGAAAGCTTGTGCTGATATTGATGTAACCATTTTTGGGTCTGGAGTGATGACTGCTGATGATGGGTCTGGCTACAATTTTGACACAGATGCTAATCATTCCTCTTCAGGTGGTTCTAGATCAGCTGAAATTGATGGAATGCCAATTTACCTGAGTGCTATAAAAGAATGGATGATTGAGTTTGGGTCCTCAATGATCTTTATATCAATTCGGACTGATATGGCCTGGTATAGGCTTGGGAAGCCATTGAAACAGTATGCTCCTTGGTACGAACCAGTCATAAAGACTGCAAGATTGGCAGTGAGCATCATTACTTTGTTAAAGGAACAGAATCGTGTGGCTAGACTTTCTTTTGGAGAAGTTATTAAAAGGGTTTCAGAGTTCAAGAAAGACCATCCTGCTTATATATCATCTAATGTAGATGCAGTGGAAAGGTATGTGGTTGTACATGGGCAAATTATTCTCCAGCAGTTTTCTGAATTTCCTGATGTAAGCATTAGGAATTGTGCATTTGCGGTTGGTCTCTCAAGGAAAATGGAAGAGAGGCACCATACAAAATGGGTGATTAAGAAGAAGAAGGTGATGCAGAGACTGGAACAGAACTTAAATCCTAGAGCATCTATGGCGCCATCTGTAAAAAGGAAAGCTATGCAGGCTACTACAACAAGGCTAATCAACAGAATCTGGGGGGAATACTATTCCAATTACTCACCCGAGGTGTCAAAGGAGGTGGCTGATTGTGAGGTGAAGGATGATGAAGAACCAGATGAGCAAGAGGAAAATGAAGAGGATGATGTTCCGGAGGAGAACTTGGATGTTCCAGAGAAAGCTCATACACCTTCTTCTACAAGAAGGCATATTAAGTCACGTTCTGACAGCAAAGAAATAAACTGGGATGGGGAATCCATAGGTAAAACAGCTTCTGGTGAACAGTTGTTTAAAAAAGCTAGAGTTCATGGACATGAGATAGCTGTTGGAGATTCAGTTCTAGTGGAACATGATGAACCAGATGAGCTTCCTTCTATTTACTTTGTTGAATACATGTTTGAAAAATTGGATGGTAGCAAAATGCTTCATGGAAAAATGATGCAACGAGGATCTGACACTGTACTTGGAAATGCAGCTAATGAGAGAGAGGTATTTTTGATCAATGAATGCATGAATCTGCAACTAGGAGATGTCAAAGAAAGTATAGCTGTCAATATCAGAATGATGCCTTGGGGACACCAGCATAGAAACACGAATGCTGATAAACTTGAAAGAGCAAAAGCAGAAGACAGAAAGAGGAAGGGATTGCCGACGGAATTTTACTGCAAAAGCTTTTATCGCCCTGAAAAAGGTGCTTTTTTCAGACTCCCGTTTGATAAGATGGGCCTTGGTAATGGTTTATGCTACTCTTGTGAGTTGCAGCAAACTGATCAGGAAAAGGAATCCTTTAAGTTTGATATGTCCAAATCCAGTTTTGTATATCTGGGGACTGAGTATTCAGTTGATGACTTTGTTTATGTAAGCCCCGATCACTTTACTGCAGAAAGAGGGGGAAATGGAACTTTCAAAGCCGGAAGAAATGTGGGGTTGATGGCCTATGTAGTATGTCAATTACTAGAAATTGTTGGACCTAAGGGATCTAAACAAGCTAAAGTAGATTCTACAAATGTTAAAGTCAGAAGATTCTTCAGACCAGAGGATATATCTTCAGATAAGGCATACTCTTCTGATATCCGGGAGATCTATTACAGTGAAGATATACATACAGTTCCTGTGGAAATAATCAAAGGAAAATGTGAAGTGAGGAAGAAGTATGATATTTCCTCTGAAGATGTCCCTGCCATGTTCGACCATATTTTCTTTTGTGAATATTTGTATGATCCATTGAATGGATCCCTTAAGAAGTTACCAGCTCAGATAAACCTGAGATTGTCAAAAATTAAGCTAGATGACGCAACATCTAGGAAGAGGAAGGGGAAGGGAAAAGAAGGAGTGGATGAAGTTGGGGAACTAAATGAAACTTCTCCACAGAATCGTTTGTCCACATTAGATATCTTTGCTGGTTGTGGTGGCTTGTCTGAGGGGTTGCAGCATTCGGGTGTCACAGATACAAATTGGGCAATTGAATACGAAGCGCCTGCTGGAGATGCATTTAGACTTAATCATCCAAAGACAAAGGTGTTCATACATAATTGCAATGTGATTTTGAGGGCTGTCATGCAGAAGTGTGGAGATTCTGATGACTGTATCTCAACTCCAGAGGCTTCTGAATTAGCTGCAGCAATGGATGAGAGCGAACTGAATAGTTTGCCACTGCCTGGACAAGTTGATTTCATTAATGGAGGCCCTCCTTGTCAGGGGTTTTCTGGAATGAATAGATTTAATCAGAGCACCTGGAGTAAAGTACAGTGTGAGATGATTCTGGCATTTTTATCCTTTGCTGATTATTATCGGCCCAAGTTTTTTCTCTTGGAGAATGTTAGGAATTTTGTTTCGTTCAACCAAAAACAAACATTTCGCTTAACTGTTGCTTCCCTTCTTGAGATGGGTTATCAGGTTAGGTTTGGTATCCTTGAAGCCGGAGCGTATGGAGTTCCTCAGTCTAGGAAGAGAGCATTTATCTGGGCTGCCTCCCCAGAGGAGGTTCTTCCAGAGTGGCCAGAACCAATGCATGTTTTTGCTGTCCCAGAATTAAAAATCGCATTATCTGAAACTTCATACTATGCAGCTGTGAGGAGTACTGCTAGTGGAGCTCCATTCCGTTCACTTACTGTCAGAGACACAATTGGAGATCTTCCTGTTGTTGGCAATGGGGCAAGCAAGACTTGCATAGAGTATCAAGGTGATCCAGTATCCTGGTTCCAAAAGAAAATCCGGGGCAGCTCAATAACATTATCTGATCACATTTCAAAAGAGATGAATGAGCTTAACCTAATCAGGTGCCAAAGAATCCCCAAGCGGCCAGGAGCTGATTGGCGTGACCTTGAAGATGAAAAGGTTAAACTATCTAATGGTCAACTAGTTGATTTGATTCCATGGTGCCTGCCTAACACTGCTAAGCGGCACAACCAGTGGAAGGGGCTCTTTGGAAGGTTGGATTGGGATGGGAACTTCCCCACTTCTATTACTGATCCCCAGCCGATGGGCAAGGTGGGGATGTGCTTTCATCCAGATCAAGACAGGATTGTTACAGTTCGTGAATGTGCACGTTCTCAAGGTTTCCCAGACAGCTACCAATTTGCTGGTAACATCTTGCACAAGCACAGGCAAATAGGAAATGCTGTTCCACCTCCTTTGGCATATGCGCTTGGAAGAAAACTCAAAGAAGCTGTTGAGAGCAAAAATAGGCTCACTTAGAACTTTTTTAAGCTGTGAATTTTACATGCATGTCAATTACCATTCACATTGCCAAATTATATCAGTTACTCATTTATTAAATTTGCAGTTTCACCT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc11g030600.2.1SL2.50ch11:22206316..222226081,560-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc11g030600.2SL2.50ch11:22206221..2222260816,388-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc11g030600.2.1.1SL2.50ch11:22222548..2222260861-2
exonexon:Solyc11g030600.2.1.10SL2.50ch11:22206923..22207084162-n/a
exonexon:Solyc11g030600.2.1.11SL2.50ch11:22206628..22206846219-n/a
exonexon:Solyc11g030600.2.1.12SL2.50ch11:22206221..22206457237-n/a
exonexon:Solyc11g030600.2.1.2SL2.50ch11:22210731..222122311,501-1
exonexon:Solyc11g030600.2.1.3SL2.50ch11:22209051..222105511,501-n/a
exonexon:Solyc11g030600.2.1.4SL2.50ch11:22208697..22208861165-n/a
exonexon:Solyc11g030600.2.1.5SL2.50ch11:22208344..22208536193-2
exonexon:Solyc11g030600.2.1.6SL2.50ch11:22208155..22208266112-1
exonexon:Solyc11g030600.2.1.7SL2.50ch11:22207917..22208064148-n/a
exonexon:Solyc11g030600.2.1.8SL2.50ch11:22207642..22207839198-n/a
exonexon:Solyc11g030600.2.1.9SL2.50ch11:22207293..22207571279-n/a
intronintron:Solyc11g030600.2.1.10SL2.50ch11:22207085..22207292n/a-n/a
intronintron:Solyc11g030600.2.1.11SL2.50ch11:22206847..22206922n/a-n/a
intronintron:Solyc11g030600.2.1.12SL2.50ch11:22206458..22206627n/a-n/a
intronintron:Solyc11g030600.2.1.2SL2.50ch11:22212232..22222547n/a-n/a
intronintron:Solyc11g030600.2.1.3SL2.50ch11:22210552..22210730n/a-n/a
intronintron:Solyc11g030600.2.1.4SL2.50ch11:22208862..22209050n/a-n/a
intronintron:Solyc11g030600.2.1.5SL2.50ch11:22208537..22208696n/a-n/a
intronintron:Solyc11g030600.2.1.6SL2.50ch11:22208267..22208343n/a-n/a
intronintron:Solyc11g030600.2.1.7SL2.50ch11:22208065..22208154n/a-n/a
intronintron:Solyc11g030600.2.1.8SL2.50ch11:22207840..22207916n/a-n/a
intronintron:Solyc11g030600.2.1.9SL2.50ch11:22207572..22207641n/a-n/a
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http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17978197%2Fdetails feature 17978197
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