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Solanum lycopersicum mRNA Solyc11g008520.1.1

mRNA details  
Name
Solyc11g008520.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc11g008520.1.1
Length
4,287
  
Description
Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III
Location(s)
SL2.50ch11:2690602..2697409
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0006508
  • GO:0008026
  • GO:0005524
Length
6808
Nb exon
21
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc11g008520.1.1 Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III

ATGTCGATGGCGCGAGCAAATGATGTTGTTTGTGGAAACCAGCTAGTCTCTGCTGATCCTTTGCCATTTGCAAGAAGCTATCAATTGGAAGCCTTGGAGGCTGCATTGAAGCAAAACACAATTGTTTACTTGGAGACTGGTTCTGGAAAGACCTTGATTGCTATTATGCTTCTTAGAAGCTATGCTTATCTTCTTCGAAAACCATCTCCTTACATAGCTGTTTTCTTGGTTCCGACTGTTGTTTTAGTGACTCAGCAAGGAGATGCTCTGATGATGCAAACTGACTTGAAAGTCGGAACATATTGGGGAGAAATGGGGGTTGATTTCTGGGATGCTGCTACATGGAAACGTCAAGTAGATGGCCATGAGGTACTTGTTATGACTCCGGCTATACTACTTTCTGCGTTGAGGCACAACTTTTTGCAGATAGATATGATAAAAGTTATAATATTCGATGAGTGCCACAATGCACGAGGCAAACACCCCTATGCAAGTATAATGATGGAATTTTATCATCGACAATTAACCCGTGAGAGTGCACAACTTCCAAGAATATTCGGGATGACTGCTTCGCCTATTAAGTCCAAAGGCCCTAGCACGCCAGATAGCTATTGGCGAAAGATTCATGACCTTGAGAATCTTATGCATTCTAAGGTATACACATGTGACAGTGAAGCTGTTTTGGCAGAGTATATCCCGTTCTCAAATCCGAAGCTGAAGATATATAAACATGTAGATATTCCTTCCACATTGTCTAAAAGTTTAGCTCATGACATGGAAAGGTTGAAAGAAAAGCATGAATGTTCGATCACAAAATCAACTCTGTCTGATAAGAGTGCTGCATCTGCAAAAAGACGTCTATCAAAACTTTATTCCGCTTTCTTATTTTGTTTGAGTGAGATGGGTGTTTGGCTGGCTTTCAAGGCAGCAGAGTTCTTGTCTCAACAAGAAACTGACTTCTTCTCGTGGGGAGAGTTAGATGTATGTGCTCAAACAATTGTTCGAGATTTCAGTTCGGATGCATCTAAGGTTTTCTCGGCTTGCTTACCTTCTGGGCCACATTGGTCAATTGGTGGTGATATTCAAGCAAATACGGATGCTGGATATTTGTCATCGAAAGTTCATTGTCTTGTAGAGTCTCTTCTCGAGTACAGGAATCTGAAGGATTTGAGATGTATCATATTTGTTGAGAGAATTATTACAGCCATTGTTCTTCGATCTTTATTGAATGAGTTGCTTCCGAAACTAAGTGGTTGGAGAACTGAGTGCACAGCGGGACATGCTTCCGTGGTTCAGTCACAGAGTAGGAAAATACAGAATAAAATTGTTGAAGAGTTTCGAAAGGGTGTGGTGAACATTATTGTCGCGACATCTATTCTTGAAGAAGGCTTGGATGTTCAAAGTTGCAACCTTGTCATTCGATTTGATCCCTCAGCTACTGTTTGTAGCTATATACAATCTCGTGGAAGAGCTCGAATGCAGAACTCCGACTTTCTTCTGATGGTCAAAAGGTATATTTTGTGCAATATTTGGAAAAGATTTCATTATATCTATGGACTGATCATTTCTCAATTTGACTCAAATCGTAGTGGAGATGAATCAACCCTTGCTCGAATGCAAAACTTTATGGCCAGTGGGGAGATGATGCGGCAAGAATCATTACGTCATGCTTCTGAACCATGTTCACCTCTAGTTGATGAAATGTATGATGAGCCTTGCTACAAAGTCGAAAGCACAGGAGCAATTATTACCCTCAGTTCTAGCGTATCGTTGTTATACTTCTATTGCTCGAGGCTACCATCAGACGGGTACTTTAAATCGTATCCTAGATGTGTGATTGATAAGGAATCACGAACGTGCACACTACAACTTCCCAAAAGTTGCCCATTGCAAAGAATTATTACTGTTCAGGGGAATAGTACTAAAATATTGAGGCAACTTGCATGCTTGGAAGCTTGTAAAGAGCTTCATCGTGTGGGTGCGTTGACTGACAATCTTGTTCCAGATATCGTCGAGGAAGAAGCAATCAACAAAGAATTGGAATGTCAAATCCATACCGTTGAAGAATCAAAATACTTCCCACCAGAATTTGTTAGTCATTTCGGAAATGAGACAGAAGCAGTGTACTACTGCTACCTAGTTGAGTTGCAACATGAAACTTACGACGATTTCCAGCTTCATGGGATTATACTTGCTGTTAGGACAAAGCTCAAGTGTGATGATGAAATATTGGCATTTGACTTGGACGTTGACAGGAGGCGACGTGTGCAAGTTCAACTTAAGTATAGTAAAGTTGTTACACTTACTTCTGAAGAGATTCGAAGGTGTCAGAGGTTTCAAGTTAGTGTATTCAAAATTCTTCTTGACCGTGATCTGAGTAAACTGCAGGACGCTTTGGCTGCAGGTCAATCTCCTATTGGTTCTGCAGTTTCCGATTATCTCTTGCTCCCATCTGTGGGTAAATCCTCTGAAATAAACTGGAAATGCGTGAATTCTTTGCTGTTTCCGTCACAAGTTCTTGGGGATAAGCATATGGATTGGTGTTCTACACAAGATCGTAAACGCAGTGTGAACACCAAAACTGGGGTGGTATGTAGCTGCCTGTTGGAGAATTCATTGGTCTTTACACCTCATAATGGCAATATATACTGCATTACCGGTTTTTTAGATAATTTGGATTGCAACTCATTGTTGAATGTGAGAACTGGAGAATCCATTACTTACCGAGAATACTACAAAAAGCGGCAAGGAATCGAACTATGCTTTGAAGAACCACTTCTTAGTGGAAAACGTATTTCGAAAGTGCACAATTACCTTCAGAGAAACAGAACTCAGAAGGCTAAAGATTCAACTGATTCATCTGTTCAGTTGCCTCCTGAACTTTGTTTTGTTATCATGTCACCTATCTCTATTTCTACCCTTTATACGTATTCATATGTTCCTTCAATCATGCATCGGATTGAGTCCTTGGTTATGGCCTCACACTTAAATAGTATGCTTTTGAATGACTGCAAACTAAACGTCTTCATCCCAACTGCTATGGTTTTGGAAGCAGTGACAACAAGGAAATGTCTCGAGAAGTTTCATTTGGAATCACTTGAAACGCTTGGAGACGCTTTCCTCAAATATGCTGTCAGTACACAGCTGTTCAAGACTCACGAGAATCATCACGAGGGTCTTCTCTGTGTTAAAAAAAGTAAAATCATTTCCAATGCTGCACTGTGCAAGCTTGGATGTGCTCGCAAAATACCGGGATTTATCCGTAACGAAGCATTCACTCTTCAAGCATGGATCATTCCAGGTGATAGTTCACAAGTTCACAGCTTCAACGAAGAGTTAATGACGTCTTCAGATAAGATGTATAGTAGGATAAAGCAGAAGATTAGAAGTAAGAGGGTAGCTGATGTGGTTGAGGCACTAATAGGTGCCTACCTCAGCTCAGGCGGGGAAGTAGCCGCTTTATCATTGATGAAATGGCTAGGGATGGACATCGATTTTGCTGATGCACCGATTCAAAGGCACTTCCCATTGAATGCTGAGAAGCTCGTTAATGTCAAGTACTTGGAATCCCTGCTACATTACAAGTTCCATGATCCATCTCTCCTTGTTGAAGCACTTACTCACGGATCTTACATGCTGCCTGAGATTCCACGATGCTATCAGAGGTTAGAATTTCTCGGAGATGCAGTACTGGATTATGTCGTTACAGCACATCTGTACTTCAAATATCCGGGACTGTCTCCAGGACTAATAACAGATTTGAGGTCTGCCTCGGTAAACAACGAATGCTATGCTCAATGTGCAATAAAGGCTAGCCTGCACAAGCACATCCTTCATGCCTCACCGGATCTGCAGAGGCAGATATGTAATACTATTGAGGATTTCAAGAACCCTGTGTCCACGTTCGGATGGGAGGCTGAAACTACTTTCCCTAAGGTACTTGCAGATGTTATCGAGTCCCTTGCTGGTGCGATCTTTGTTGATTCTGGCTTCAATCAAGACACTACATTTCAGTGCATACGACCACTTTTAGAACCGTTAGTTACACCACAGACCCTAAAGCCCCATCCGGTAAGAGAGTTAAGTGAACTCTGTGACCAGAAAGGCTACGTAAAGAAGAAGGATGTCGTCTCTCGTGAGAATGGTGTAGCCTATATTACAGTGGAGATTGATGCAGATGGTGTTACTCACAAGAGCACGTGCTCGGGACGAGACAAAATCATGGCCAAGAAAGTTGCTTGCAAAAATGTGCTCAAGTCTCTCAAAGAATGTTCATACAATGCATAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc11g008520.1.1SL2.50ch11:2690601..26974091,429+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc11g008520.1SL2.50ch11:2690602..26974096,808+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc11g008520.1.1.1SL2.50ch11:2690602..269067877+n/a
exonexon:Solyc11g008520.1.1.10SL2.50ch11:2693161..2693260100+2
exonexon:Solyc11g008520.1.1.11SL2.50ch11:2693349..2693544196+1
exonexon:Solyc11g008520.1.1.12SL2.50ch11:2693619..2694076458+n/a
exonexon:Solyc11g008520.1.1.13SL2.50ch11:2694167..2694399233+1
exonexon:Solyc11g008520.1.1.14SL2.50ch11:2694476..2694750275+2
exonexon:Solyc11g008520.1.1.15SL2.50ch11:2694838..2695265428+n/a
exonexon:Solyc11g008520.1.1.16SL2.50ch11:2695356..2695456101+1
exonexon:Solyc11g008520.1.1.17SL2.50ch11:2695534..2695730197+2
exonexon:Solyc11g008520.1.1.18SL2.50ch11:2695821..2696030210+n/a
exonexon:Solyc11g008520.1.1.19SL2.50ch11:2696122..2696532411+n/a
exonexon:Solyc11g008520.1.1.2SL2.50ch11:2690771..2690948178+1
exonexon:Solyc11g008520.1.1.20SL2.50ch11:2696706..2696978273+n/a
exonexon:Solyc11g008520.1.1.21SL2.50ch11:2697059..2697409351+n/a
exonexon:Solyc11g008520.1.1.3SL2.50ch11:2691692..2691805114+n/a
exonexon:Solyc11g008520.1.1.4SL2.50ch11:2691960..2692094135+n/a
exonexon:Solyc11g008520.1.1.5SL2.50ch11:2692178..269226285+n/a
exonexon:Solyc11g008520.1.1.6SL2.50ch11:2692344..269240865+2
exonexon:Solyc11g008520.1.1.7SL2.50ch11:2692514..2692654141+n/a
exonexon:Solyc11g008520.1.1.8SL2.50ch11:2692721..2692849129+n/a
exonexon:Solyc11g008520.1.1.9SL2.50ch11:2692935..2693064130+n/a
intronintron:Solyc11g008520.1.1.1SL2.50ch11:2690679..2690770n/a+n/a
intronintron:Solyc11g008520.1.1.10SL2.50ch11:2693261..2693348n/a+n/a
intronintron:Solyc11g008520.1.1.11SL2.50ch11:2693545..2693618n/a+n/a
intronintron:Solyc11g008520.1.1.12SL2.50ch11:2694077..2694166n/a+n/a
intronintron:Solyc11g008520.1.1.13SL2.50ch11:2694400..2694475n/a+n/a
intronintron:Solyc11g008520.1.1.14SL2.50ch11:2694751..2694837n/a+n/a
intronintron:Solyc11g008520.1.1.15SL2.50ch11:2695266..2695355n/a+n/a
intronintron:Solyc11g008520.1.1.16SL2.50ch11:2695457..2695533n/a+n/a
intronintron:Solyc11g008520.1.1.17SL2.50ch11:2695731..2695820n/a+n/a
intronintron:Solyc11g008520.1.1.18SL2.50ch11:2696031..2696121n/a+n/a
intronintron:Solyc11g008520.1.1.19SL2.50ch11:2696533..2696705n/a+n/a
intronintron:Solyc11g008520.1.1.2SL2.50ch11:2690949..2691691n/a+n/a
intronintron:Solyc11g008520.1.1.20SL2.50ch11:2696979..2697058n/a+n/a
intronintron:Solyc11g008520.1.1.3SL2.50ch11:2691806..2691959n/a+n/a
intronintron:Solyc11g008520.1.1.4SL2.50ch11:2692095..2692177n/a+n/a
intronintron:Solyc11g008520.1.1.5SL2.50ch11:2692263..2692343n/a+n/a
intronintron:Solyc11g008520.1.1.6SL2.50ch11:2692409..2692513n/a+n/a
intronintron:Solyc11g008520.1.1.7SL2.50ch11:2692655..2692720n/a+n/a
intronintron:Solyc11g008520.1.1.8SL2.50ch11:2692850..2692934n/a+n/a
intronintron:Solyc11g008520.1.1.9SL2.50ch11:2693065..2693160n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17970630%2Fdetails feature 17970630
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