Solanum lycopersicum mRNA Solyc10g005130.2.1

mRNA details  
Name
Solyc10g005130.2.1
Type
mRNA
Length
6,054
Organism
Solanum lycopersicum
Description
Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold
Location(s)
SL2.50ch10:111879..125251
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0008026
  • GO:0005524
  • GO:0005622
Length
13373
Nb exon
22
Sifter term
  • GO:0005515
  • GO:0003725
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc10g005130.2.1 Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold

AGAGAGTCCACTGAAGCTGAAGAATCTGAACAAAGTTCGAATCTTTGAAACGAATAAATTGAATTGATCTTTTAGCTCCACTATTTTGCAGGATCTGTGTTGGCCTTATTTTTGTGTTATTGTTGTTTTTATTTATTTGGGGTTCTTCAATTGGGTAACACCATAGTATATTGTAATGGATGGTGATGGTAGTGGAGTTTCTGAGAAACCTTCTTATTGGATTGATGCTTATGAGGACATCTCATGTGATGATCTCATCCAAGATTTTGTTGGGTCCAACACTGTACCCGTTGCACCATTGAATCAATTGGGTCCGGATGAGACTCTTGATCCTTGTTTCTTTGGTGGTATTGATGGGATTCTCGAGAAATTAAAGAATGGTGATGGTTCTGTACATTCTGTGGATGGAAACAACAGTAATGTACACACTGAAGCTTTAGCTGCACCTGGAATTTGCAAGGACAACGGGCCACAAGTTAAAAAGGATGTGGACCACAACAAAGGTGATTTGGGGAAGAAGTCTTTACAAGAAGGAAATGGATTTTCCAGGCATAAGGAACGGGGTTGTAGTGATAAAGAAGAGAAAAATGGAAAAAGGGCGCGGCTTGGTGATGATAGCTACCAGAGGAGAGGCTGTGATAGACCTTTGGCTAGAAAGAGACTTCGCGAGAATGATGAGATCAATAGAGTAGGGAGGGATCAAAGAAAAAGAAGAGAATATCATGGTGGTCGTGGTGGAAGAGATAGGAACTGGAGGGAAGGGAGTGGCTTTTGGGAATGGGACAAAGAAAAGAAAGAGATGATCTATCGTGTGGGTTCATGGGAAGCTGATAGAAATCGAGAGGGGAAGTTACCAACTGAGAGAAGCCGTGAACCTTCTGGAGCTATTGAGAAGAAAGATGACAAATTAAAGGAACAAGCTCCCAAAGAGGAAGCACGCAAGTATCAGTTGGATGTACTTGAGCATGCCAGAAAGAGCAATACAATAGCTTTTCTTGAAACAGGAGCAGGAAAAACGCTTATTGCCATCCTCCTCATGAAGAGTCTATGTAGTGACTTGCAAAAGAAGAACAAGAAAATGCTGGCAGTTTTTCTGGTTCCTAAGGTTCCACTTGTTTATCAGCAAGCAGAAGTTATTCGTGAGCAAACTGGCTATCAAGTTGGCCATTATTGTGGTGAAATGGGCCAAGATTTTTGGGATGCACGAAGGTGGCAGCGCGAGTTCGAAACTAAACAGGTCCTAGTTATGACTGCTCAGATTCTCTTGAACATATTGAGGCACAGTATAATAAAAATGGAAGCAATTAATCTCCTTATTATGGATGAATGCCACCATGCTGTGAAGAAGCATCCATATTCTTTAGTAATGTCTGAGTTCTATCATACAACACAAAAGGAGAAAAGGCCATCTGTTTTTGGCATGACTGCTTCACCTGTTAACTTGAAGGGTGTTTCCAGCCAGGTTGACTGTGCAATAAAGATTCGTAATTTGGAGACTAAATTAGATTCTGTCGTCTTTACCATAAAAGACCGCAAGGAGCTGGAAAAACACGTGCCAATGCCGTCAGAAGTAGTAGTGGAGTATGATAAAGCTGCTAGTCTGTGGTCTTTTCATGAACAAATAAAAAAAATGGAATCAGAGGTTGAAGAAGCTGCTCTGTTAAGCTCCAGAAGAAGTAAATGGCAGTTTATGGGGGCTTGTGATGCTGGAGCTAGAGGAGAGCTGCGCCAAGTCTATGGTGTTTCTGAAAGAACTGAAAGTGATGGAGCTGCTAATCTAATTCAAAAGTTGAGGGCTATCAACTATGCTCTTGGTGAACTTGGACAGTGGTGTGCCTATAAGGTAGCACATTCTTTTTTGACAGCTCTACAAAATGATGAAAGGGCAAGTTACCAGCTTGATGTCAAGTTCCAAGAATCCTACCTGGATAAGGTTGTCTCTCTCTTGCAATGTCAGTTATCAGAGGGAGCTGTAGCACAAAGTAACTTGAATGCAGAGACGCATAAAGGTGACAATCCAAATAGTGATAGGCCTGATGAGATGGAGGAGGGCGAGCTTCTTGAAAGTCATGTTGTATCTGTTGGAGAGCATGTAGATGTGATTCTAGGAGCTGCAGTGGCTGATGGGAAAGTGACACCTAAAGTTCAATCATTAATTAAGATTCTTCTCAAGTATCAGCATACTGAAGATTTTCGTGCTATAATATTTGTTGAACGCGTTGTGACTGCATTGGTTCTTCCAAAGGTTTTTGAGGAGCTCCCTTCCCTAAGTTTTATCAATTCATCAAGTTTAATCGGGCATAACAATAGTCAAGAAATGCGAACAGGTCAAATGCAGGACACAATAGCCAAATTTCGAGATGGTCGTATTAATTTGCTAGTAGCTACTAGTGTAGCTGAAGAAGGACTTGACATCCGGCAATGCAATGTTGTCATTCGGTTTGATCTGGCCAAAACTATTTTGGCGTATATACAGTCTAGGGGCCGTGCCCGTAAGCCCGGATCAGATTATATTTTGATGGTTGAGAGAGATAATTCATCACATGAAGCATTTCTGAGGAATGCCAGAAACAGTGAAGAAACGCTGCGGAAAGAAGCAATTGAGCGGACTGATATTAGTCATCTCAAAGATGCCTCCAAGTTGATCTCTGCGGAGGCACCAACAGATTCAGTTTATCAGGTGGAGTCAACTGGAGCTGTTGTGAGCTTAAATTCTGCTGTTGGGCTGATCCACTTTTATTGCTCCCAATTACCAAGTGACAGGTACTCGATTCTCCGTCCGGAGTTTATAATGGAGAGTCACGAGAAGTCAGGTTGCCCTACTGAATATTCATGCAGGCTTCAACTGCCCTGCAATGCACCTTTCGAGACACTTGATGGCCCTGTATGCAGCTCAATGCGCCTCGCCCAGCAGGCTGCTTGCTTGGATGCTTGCAAGAAGCTCCACCAGATGGGGGCATTTACGGACATGCTCTTGCCTGACAAGGGAAGTGGGGTGGAGTCGGAGAAAGTTGAACAGGATGAAGAAGGAGATCCAATTCCTGGAACTTCCAGGCACAGGGAATTTTATCCTGAAGGTGTAGCTGATATTCTGAGGGGTGATTGGATTTTGTCGGGAAAGGATCCTCTTGTCAGCTCAAAGTTCATTCATCTTTATATGTATGCTATCAAATGTGTAAATATTGGCCCCTCGAAGGACCCATTCTTAACTGATGTGTCAGAGTTTGCAATACTATTTGGCAACGAGCTGGATGCAGAGGTATTATCGATGTCAATGGATTTATTTATTGCTCGAACTGTAGTAACAAAGGCGACTCTTGTCTTCAGAGGGCCAATAGATGTTACAGAGTTTCAGTTGGCGTCCCTCAAGAGTTTTCATGTAAGAATGATGAGCATTGTTTTGGATGTTGATGTTGAGCCGTCCACCACTCCATGGGACCCTGCAAAGGCATATCTATTTGCCCCTGTTAGTGGTGATGAATCTGGAGATCCTATAAAAGATATCAACTGGGATCATATTAAAAAAATTACCGAAACTGGTGTATGGAGCAATCCTCTTCAGAGAGCTCGCCCAGATGTATATCTTGGTACAAATGAGCGTTCTCTTGGTGGAGACCGAAGAGAATATGGCTTTGCGAAACTGCGACATGGCATGGCCATCGGACTGAAGTCTCATCCTACATATGGTGTTAGAGGTGCTATAGCACACTATGATCTGGTCCAAGCATCTGGTTTGGTCCCTAACCGAAGTAGCCTTGATGATGTTGAAGTTGATTTGAATAAAGACAAGATAATGATGGCTGATTGTTCTCTTAGAGCCGAAGATATTGTAGGAAGAATTGTCACTGCAGCTCACTCTGGAAAGAGATTTTATGTTGATTGCATTCGTAGTGATATGACTGCAGAGAACTCATTTCCAAGGAAAGAAGGTTACCTAGGTCCTCTTGAGTACAGCAGTTATGCTGCATATTATAAGCAAAAGTATGGAGTTGATTTGGTCTATAAAAAGCAACCTCTAATAAGAGGGCGTGGTGTTTCATATTGCAAAAACCTTCTGTCACCACGATTTGAACATTCAGAAGAACATGAGGGTGAACTCGAAGAGGCAACTGACAAAACGTATTATGTTTTCCTCCCTCCTGAGCTCTGTGTTTTGCATCCACTTCCTGGATCCCTTGTTCGGGGTGCTCAAAGATTGCCCTCGATCATGAGGAGGATTGAGAGCATGCTGCTTGCTGTTCAGCTTAAGGAAATGATTGGTTACCCTGTACCAGCACTGAAGATCTTGGAAGCATTGACCGCTGCTTCTTGTCAGGAGACTTTCTGCTATGAAAGAGCAGAACTTCTTGGAGATGCATATCTGAAATGGGTTGTTAGTCGGTATCTTTTTCTTAAGTATCCCCAGAAACATGAAGGCCAACTCACCAGGATGAGACAGCAAATGGTAAGCAACATGGTACTGTATCAAAATGCCTTGAGTAAGGGAATCCAGTCGTATATCCAAGCAGATCGATTTTCTCCATCAAGATGGGCCGCTCCTGGGGTGTTGCCTGTCTATGACGAGGACCTCAATGAGGATGAAACATCGATATTTGATCATGAAACAGCAGAAAATGGTACTGTAGCAGCAAAGGCTCTAGCTGGTGATGAGTTTGAAGATGAGGAAACTGAAGAAGGAGTATATTACGTTGAGGGTGGAAAGTATGCTGCAAACCACTTCATGAAATGGATTGGAGTTGAGGTTGATTTCGATTTCAATTTCAAAGAGACAGAATACTCTATTAGGTCTTGTAGCATTCCTGAGAATGTACTCAAGAGTGTTGAGTTTGATGCATTACAAGGTGCTTTGAACATCAGCTTCAATGATAAAGGCCTACTGCTAGAAGCAATTACCCATGCTTCACGCCCATCTTCTGGGGTCTCCTGTTATCAAAGACTGGAGTTTGTGGGTGATGCAGTATTAGATCATCTCATCACGAGGCACTTGTTCTTTACATACACAGATCTTCCCCCAGGCCGATTGACTGACTTGCGAGCTGCGGCTGTCAACAATGAAAATTTTGCACGTGTTGCTGTTAAGCACAGTCTTCATTTACACCTTCGTCATGGATCCAGTGCTCTAGAAAAACAGATTCGTGACTTTGTGAATGAGGTTAAAAATGAACTATCAAAACCAGGTTTCAACTCCTTTGGTTTGGGAGATTGCAAAGCTCCTAAAGTTCTTGGTGATATTGTTGAATCAATTGCTGGGGCTATTTTTCTAGACAGTGGATGTAATACTAAATCTGTATGGGAGGTTTTTCAACCGCTATTGCATCCAATGGTTACACCAGAAACACTGCCGATGCATCCAGTTCGAGAATTGCAAGAGCGTTGTCAACAACAAGCTCAAGGCTTAGAGTACAAAGCAACTCGAAGTGGGAATATGGCTACAGTTGAAGTATATGTGGATGGTGTTCAGGTTGGAATGGCGCAGAATCCTCAGAAGAAAATGGCACAGAAGTTGGCTGCCAGGAATGCCCTTGTTGTGTTGAAAGAGAGGGAGGAAGCTGAAGCTAAGAAGGCTGATGATACAAAGAAAAAGAAGAATGGCAACCCGAGTTTTACTAGGCAGACACTAAATGATATATGCTTGCGCAAAAATTGGCCTATGCCACTGTATCGATGTGTGCACGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATATGGAGTACGCGTAAATATTTCAGACAAAGGATTTACAGATGAATGTATTGGGGAACCTATGCCGAGTGTAAAGAAAGCCAAGGATTCCGCAGCAGCTCTTCTATTGGAACTCTTAAATAGACGGTACTCGTAAAATCTTTTTCAACTCCAGTCTTGTGGCGTGACGTACCTACATTTTTGGTTTTCAGTTTCTATCAGACGCTGCTGAACTATGCTACTTCTTTCTTTAGCTATATATATGGTATTCAGTTCTTTATACTGCAGACATTTCTCATCTCCAATTATATTGAATTGGTGTAACTTATATGTATTCCAATTACAGTTTGTCTATATATATATATATTG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc10g005130.2.1SL2.50ch10:112142..1250391,889+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc10g005130.2SL2.50ch10:111879..12525113,373+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc10g005130.2.1.1SL2.50ch10:111879..11196991+n/a
exonexon:Solyc10g005130.2.1.10SL2.50ch10:119110..119343234+n/a
exonexon:Solyc10g005130.2.1.11SL2.50ch10:119418..119568151+1
exonexon:Solyc10g005130.2.1.12SL2.50ch10:119639..119821183+1
exonexon:Solyc10g005130.2.1.13SL2.50ch10:121252..121413162+n/a
exonexon:Solyc10g005130.2.1.14SL2.50ch10:121531..12162696+n/a
exonexon:Solyc10g005130.2.1.15SL2.50ch10:121724..122349626+n/a
exonexon:Solyc10g005130.2.1.16SL2.50ch10:122618..122718101+n/a
exonexon:Solyc10g005130.2.1.17SL2.50ch10:122808..123007200+1
exonexon:Solyc10g005130.2.1.18SL2.50ch10:123085..123478394+2
exonexon:Solyc10g005130.2.1.19SL2.50ch10:123557..124011455+n/a
exonexon:Solyc10g005130.2.1.2SL2.50ch10:112059..1130901,032+n/a
exonexon:Solyc10g005130.2.1.20SL2.50ch10:124125..124289165+2
exonexon:Solyc10g005130.2.1.21SL2.50ch10:124404..124771368+n/a
exonexon:Solyc10g005130.2.1.22SL2.50ch10:124862..125251390+n/a
exonexon:Solyc10g005130.2.1.3SL2.50ch10:113177..113290114+n/a
exonexon:Solyc10g005130.2.1.4SL2.50ch10:116013..116223211+n/a
exonexon:Solyc10g005130.2.1.5SL2.50ch10:116535..116929395+n/a
exonexon:Solyc10g005130.2.1.6SL2.50ch10:117023..117251229+2
exonexon:Solyc10g005130.2.1.7SL2.50ch10:117655..117827173+n/a
exonexon:Solyc10g005130.2.1.8SL2.50ch10:117914..118036123+2
exonexon:Solyc10g005130.2.1.9SL2.50ch10:118859..119019161+n/a
intronintron:Solyc10g005130.2.1.1SL2.50ch10:111970..112058n/a+n/a
intronintron:Solyc10g005130.2.1.10SL2.50ch10:119344..119417n/a+n/a
intronintron:Solyc10g005130.2.1.11SL2.50ch10:119569..119638n/a+n/a
intronintron:Solyc10g005130.2.1.12SL2.50ch10:119822..121251n/a+n/a
intronintron:Solyc10g005130.2.1.13SL2.50ch10:121414..121530n/a+n/a
intronintron:Solyc10g005130.2.1.14SL2.50ch10:121627..121723n/a+n/a
intronintron:Solyc10g005130.2.1.15SL2.50ch10:122350..122617n/a+n/a
intronintron:Solyc10g005130.2.1.16SL2.50ch10:122719..122807n/a+n/a
intronintron:Solyc10g005130.2.1.17SL2.50ch10:123008..123084n/a+n/a
intronintron:Solyc10g005130.2.1.18SL2.50ch10:123479..123556n/a+n/a
intronintron:Solyc10g005130.2.1.19SL2.50ch10:124012..124124n/a+n/a
intronintron:Solyc10g005130.2.1.2SL2.50ch10:113091..113176n/a+n/a
intronintron:Solyc10g005130.2.1.20SL2.50ch10:124290..124403n/a+n/a
intronintron:Solyc10g005130.2.1.21SL2.50ch10:124772..124861n/a+n/a
intronintron:Solyc10g005130.2.1.3SL2.50ch10:113291..116012n/a+n/a
intronintron:Solyc10g005130.2.1.4SL2.50ch10:116224..116534n/a+n/a
intronintron:Solyc10g005130.2.1.5SL2.50ch10:116930..117022n/a+n/a
intronintron:Solyc10g005130.2.1.6SL2.50ch10:117252..117654n/a+n/a
intronintron:Solyc10g005130.2.1.7SL2.50ch10:117828..117913n/a+n/a
intronintron:Solyc10g005130.2.1.8SL2.50ch10:118037..118858n/a+n/a
intronintron:Solyc10g005130.2.1.9SL2.50ch10:119020..119109n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17943017%2Fdetails feature 17943017
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