Solanum lycopersicum mRNA Solyc09g083080.2.1

mRNA details  
Name
Solyc09g083080.2.1
Type
mRNA
Length
2,204
Organism
Solanum lycopersicum
Description
Nucleolar protein 5 (AHRD V1 ***- Q6P364_XENTR); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region
Location(s)
SL2.50ch09:68744153..68748170
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Length
4018
Nb exon
9
Sifter term
GO:0051082
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc09g083080.2.1 Nucleolar protein 5 (AHRD V1 ***- Q6P364_XENTR); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region

CTGTAACTAAGCAACCTAATTATGTTTCTAGTCTTAGTTGTTTTATAAATTTCCTTATTTTAAATCAGCCCAATATAAGCCCAACCCAAAATTCATCAATATCAGCCCAACCCAAATTGTTTTTGACCCGCCCACATTGCTTATACCCTAACCCTTTTCTCTTTCTTCCTCACTTAAATAACACACTCCAGTAAACCCTAAACCCTAATTCTAAATAAGCCTCCGCCTTCAAATTCTCTCCTCTCTCGGAGTTCCGTTTTGTGGAGGTGAAAATCCATCGTAGTTCCATAATCGGCGCGCCGGAGAAAGGTAACATTAGATTTATGATTCTTCCGGAGATGTTGGTATTGTTTGAAACACCGGCGGGTTTTGCCCTTTTCAAAGTTTTGGATGAGGGAAAGCTCTCCAAAGTTGAGGATTTGTGGAAGGACTTCTCCTCAACTGATTCCGCTAGAAAGGTCGTGAAGCTAAAAGCTTTCTCCAAGTTTGAAAACACCTCAGAAGCTCTATCAGCAGCTACGTTGTTGATAGATAGCAAACCCAGCAAAGGACTGCGCAAGTTCTTGAAAGCACACTGTGATGGTGAAACTTTGGGGGTTGCTGATTCAAAGCTAGGAAATGCAATTAAAGAGAAATTGCAAATTGATTGTGTTCATAATAATGCTGTCATGGAATTGATGAGAGGAGTTAGAAGTCAGTTGACTGAGCTCATTTCTGGTCTTGCATCTCAAGACTTGGCCCCAATGAGCTTGGGTTTATCTCACAGTCTTTCAAGATACAAGCTAAAGTTTAGTCCTGACAAGGTGGACACAATGATTGTACAGGCCATTAGCTTGTTGGATGATCTTGATAAAGAGCTAAATACATATGCTATGAGGGTCCGAGAATGGTATGGTTGGCATTTCCCGGAACTCGCAAAGATTGTACAAGATAACATTCTTTATGCCAAGGCTGTGAAGTTGATGGGTGACCGTACAAATGCTGCAAAGTTGGATTTCTCTGAGATACTCCCAGAAGAGGTTGAGACTGCATTGAAAGAGGCATCCATGATCTCCATGGGTACTGAAGTTAGTGATCTTGATCTGGAGAATATTAAAGATCTATGCACCCAAGTTCTTTCATTCTCCGAGTACAGAGCTCAGTTGTATGATTATTTGAAGAGCAGGATGAACACCATTGCTCCAAATCTTACAGCTCTTGTTGGAGAACTTGTTGGTGCTCGGCTTATTGCTCATGGTGGTAGCTTAATGAATCTCGCGAAGCAACCTGGAAGTACAGTTCAGATACTTGGTGCTGAAAAGGCTCTTTTCAGAGCTTTGAAGACAAAACACGCAACTCCAAAATATGGGCTTATATATCATGCATCTTTGATTGGACAGGCAGCACCAAAACACAAGGGTAAAATTTCAAGATCTCTTGCTGCAAAGACTGCATTGGCTATTCGATACGATGCTCTTGCAGATAGCCAAGATAATTCCATGGGTTTGGAGAATCGTGCCAAGCTTGAGGCACGCTTAAGAGCCTTAGAAGGCAAAGAGTTGAGCAAATCAGCTGGGTCTGCTAAGGGCAAACCTAAGATTGAAGTTTATGACAAGGATCGCAAAAAAGGAGGGTTGATAACACCAGCTAAGGTTTACAATCCTTCTGCTGATTCTGTTATGGGACACACTGGGAATGAGGAAAAGAAAATGAGTATAGATGATCAAACCGAGGAAGCAGCAGGTGATGAATCCCCTGTTACTAAAGGAGAGAAGAAAAAGAAAAAGAAGAAATCTGCTGAAGCGGAGGATGGCGCAGAACCTGAAGAAACTGGGAAGAAGGAGAAGAAGAAAAAGAAGAAACATGCGGATAATGAAGTGGAAAATGTAGAACTCGAACAAAGTAAGAAAAAGAAGAGGAAACACGCTGATGTCGATGAGGATGAACCAGAAACCACGGAAAAGAAGAAAGATAAAAAGAAGAAGAAGAAAGCTGAAGAATAAAGTGTCCCAGCTGAGACATTTTTTAGTATCAACAATTTTGTTTTTTGGGCATGGGCGGCATGTTTTTTAAGTTGTACAATGATGTCTTTGTTAAGTTATTTAGTGCTTTGTAATGCAACTTAGGATTCTGTTAGTTAAACACCATGCTTTTCAATCTTACTATGGATGCGTTATTGCTACTTTGGAATATTTGCTATATGGTATTTTACATGTTTAAGCCAC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc09g083080.2.1SL2.50ch09:68744374..68747847553-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc09g083080.2SL2.50ch09:68744153..687481704,018-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc09g083080.2.1.1SL2.50ch09:68747845..68748170326-n/a
exonexon:Solyc09g083080.2.1.2SL2.50ch09:68747688..6874777790-n/a
exonexon:Solyc09g083080.2.1.3SL2.50ch09:68747557..6874759842-n/a
exonexon:Solyc09g083080.2.1.4SL2.50ch09:68747224..68747403180-n/a
exonexon:Solyc09g083080.2.1.5SL2.50ch09:68746964..68747128165-n/a
exonexon:Solyc09g083080.2.1.6SL2.50ch09:68745741..68745941201-n/a
exonexon:Solyc09g083080.2.1.7SL2.50ch09:68745018..68745515498-n/a
exonexon:Solyc09g083080.2.1.8SL2.50ch09:68744799..68744927129-n/a
exonexon:Solyc09g083080.2.1.9SL2.50ch09:68744153..68744725573-n/a
intronintron:Solyc09g083080.2.1.2SL2.50ch09:68747778..68747844n/a-n/a
intronintron:Solyc09g083080.2.1.3SL2.50ch09:68747599..68747687n/a-n/a
intronintron:Solyc09g083080.2.1.4SL2.50ch09:68747404..68747556n/a-n/a
intronintron:Solyc09g083080.2.1.5SL2.50ch09:68747129..68747223n/a-n/a
intronintron:Solyc09g083080.2.1.6SL2.50ch09:68745942..68746963n/a-n/a
intronintron:Solyc09g083080.2.1.7SL2.50ch09:68745516..68745740n/a-n/a
intronintron:Solyc09g083080.2.1.8SL2.50ch09:68744928..68745017n/a-n/a
intronintron:Solyc09g083080.2.1.9SL2.50ch09:68744726..68744798n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17937552%2Fdetails feature 17937552
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)