Solanum lycopersicum mRNA Solyc09g082830.2.1
 mRNA details
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| Name | Type |
Length
3,240
|
Organism |
|
Description
ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
|
|
Location(s)
SL2.50ch09:68491048..68497492
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0003676
- Length
- 6445
- Nb exon
- 21
- Sifter term
- GO:0019899
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc09g082830.2.1 ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
GAACTATATTGGACTGTGCCATCTAGTGAAAGACATCATTACTTTTGAACAGTTTTCTTCTTGTGCTTATCTAGAAAAGCAAATAAAGATAAAATAGCATCATCATGCCTATAAGGCAGATGAAAGAAAGTTCAGAACAACACATTGTGATCAAACCCCATTTGCAAAACACTATGAATCCAGTTCAGAAAAACCCCAAGACCACTCAAAATGGCAAAGGGCCACCAAATCAAGAACCTCCAAACAACAAAATCCATATCCAGACTTCACCCCCTTCAAGAAATAGAGGTAGAAGGAGAGGAAGAGGAGGCAAAAAGTCAGATCAAGGTGAGACCTTTATGAGGCCTAGTTCAAGGCCTTGTACAGCAGCTAGCAAGCCAGTTATAGCAGCTTCTGTTGAAGCAACAAATGTGTCAGGAGTTGAGAGTAATGGAACTAGCTCAGGGTTTCCTTCTTCAAGTAAGTCTTTGTGTTTTGCCCCAAGACCAGGTTATGGGCAACTTGGGACAAAATGCATTGTAAAAGCAAACCATTTTTTGGCTGATTTTCCAGACAAAGAGTTGAATCAGTATGATGTTACTGTAATCCCTGAAGTGTCATCAAGAACTGTAAACAGAGCTATCATGGCAGAGCTGGTGAAACTGTACAAAGAATCCCACCTAGGGATGAGATTACCAGCTTATGATGGCAGAAAGAGTCTTTACACTGCTGGTGAACTTCCTTTTAAGTGGAAGGAGTTTACCATTAAGCTTATTGATGAAGATGATGTGATCAATGGTCCAAAGAGAGAGAGAGAATATAAAGTGGTGATTAAGTTTGTTGCAAGAGCAAATCTACATCATCTGAGTGAATTTCTTGCTGGTAAGCGCGCTGACGGTCCAAAAGAAGCTCTTCAAATTCTGGACATTGTTTTGAGAGAGCTTTCGATCAAGAGGTATTGTCCAGTTGGAAGATCTTTCTTTTCACCTGATATACGGAAGCCTCAACCTCTTGGTGATGGTTTAGAAGCATGGTGTGGATTCTACCAGAGCATTAGACCGACCCAAATGGGCTTGTCGCTTAACATTGATATGGCTTCAGCTGCATTTATTGAAGCTCTACCAGTGATAGAGTTTGTAGCTCAGCTTCTAGGAAAAGATGTGTCGTCAAGACCCTTATCTGACTCGGATCGTGTAAAGATTAAGAAGGCTCTTAGAGGAGTGAAAGTTGAAGTGACACACAGGGGCAATGTCCGGAGAAAGTATCGTGTTTCAGGACTAACAACTCAGCCCACGAGGGAACTAGTATTTCCTGTTGATGACAATTTAACCATGAAGTCGGTTGTTGAATACTTTCAAGAAATGTATGGCTTTACTATAAAGAATACACATCTTCCATGCCTTCAAGTAGGGAACCAAAAGAAAGCCAACTATTTACCTATGGAGGCGTGTAAAATTGTTGAGGGACAACGATACACCAAAAGGTTGAGTGAGAAGCAAATTACTTCTCTTTTGAAGGTCACATGCCAAAGACCAAGAGATCGTGAGAACTCAATCTTGCAGACTGTTCAACACAATGATTATAATGAAGACCCATATGCTAAGGAGTTTGGAATCAAAATCAGTGAAAAGCAAGCATCTGTGGAAGCCCGTGTGTTGCCTGCTCCTTGGCTAAAATATCACGAGACGGGGAAGGAGAAGGATTGTCTACCTCAAGTTGGGCAGTGGAATATGATGAACAAGAAAATGATAAATGGGATGACAGTCAACCGTTGGGCATGCATCAACTTTTCACGAAGTGTCCAAGAGAGTGTTGCTCGTGGCTTTTGTAACGAACTCACTCAGATGTGTCAAGTATCTGGAATGGAGTTCAATCCGGACCCAATAATTCCAATATACATGGCCAGGCCAGATCAAGTAGAGAAAGCCTTGAAGCATGTATATCATTCATGCGTAAACAAGCTAAAAGGAAAAGAACTTGAGCTTCTGTTGGTCATTCTACCAGATAACAATGGTTCCCTCTATGGTGACATAAAGCGGATATGTGAGACTGATCTCGGTTTAATAACCCAATGCTGTCTGACAAAGCATGTATTCAAGATCAGCAAACAATATTTGGCAAATGTATCCTTGAAGATCAACGTCAAGATGGGTGGTCGAAATACCGTCCTGTTGGATGCTATTAGCTGTAGAATACCATTAGTAAGTGATATACCTACCATCATATTCGGAGCAGATGTGACCCACCCTGAAAACGGAGAAGATTCTAGCCCTTCAATTGCAGCTGTAGTAGCTTCTCAAGATTGGCCTGAGGTGACAAAATACGCCGGTCTTGTTTGCGCTCAAGCTCATAGACAAGAACTTATACAAGATTTGTACAAGACATGGCATGATCCTGCACGTGGAACAGTTAGTGGTGGCATGATAAGGGATCTTCTTATATCCTTCAGAAAGGCCACAGGCCAAAAGCCACAAAGGATAATCTTTTATCGGGATGGAGTGAGTGAAGGTCAATTTTACCAAGTACTGCTTTTCGAGTTAGATGCAATTAGGAAGGCTTGTGCGTCTTTAGAACCAAATTATCAACCGCCAGTAACTTTTATCGTGGTACAGAAACGACATCACACCCGACTATTTGCAAATAATCACAAGGACAGGAGCAGCATTGATAGGAGTGGAAACATATTGCCTGGTACTGTGGTTGATACAAAAATCTGTCATCCAACAGAATTCGACTTCTATCTTTGTAGCCACGCTGGCATTCAGGGTACGAGCCGGCCTGCACATTACCATGTTCTGTGGGATGAAAACAATTTCACAGCAGACGGAATCCAGTCCTTGACTAACAATCTCTGCTATACATATGCAAGATGCACACGTTCTGTCTCTGTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATTTCGAGCCAGATTCTACATGGAACCAGACATGCCTGAAACTAATTCAGGCAGCCCTCATCAAGGCAGCAGCAAGGCTATACGAGAGACGGGTGTTAGGCCATTGCCCGCTCTTAAAGAAAATGTGAAGAGAGTGATGTTTTATTGTTAGGAAGAAGAGATAACAAGTGAGTAGCAAATGTAACAAATAGTAAGTAGGGGGTTCAGTTCAGACCACATGAATCTTTGTTTGTAAATGTATGTTGATCATCCTAGGTTAATTGTCATGTTAGTTTTAATGATGTAAAGCGGCTTTATTTTCAATTAATGGTAATTAGTTTAGCATTATAGCCAGGTTA
GAACTATATTGGACTGTGCCATCTAGTGAAAGACATCATTACTTTTGAACAGTTTTCTTCTTGTGCTTATCTAGAAAAGCAAATAAAGATAAAATAGCATCATCATGCCTATAAGGCAGATGAAAGAAAGTTCAGAACAACACATTGTGATCAAACCCCATTTGCAAAACACTATGAATCCAGTTCAGAAAAACCCCAAGACCACTCAAAATGGCAAAGGGCCACCAAATCAAGAACCTCCAAACAACAAAATCCATATCCAGACTTCACCCCCTTCAAGAAATAGAGGTAGAAGGAGAGGAAGAGGAGGCAAAAAGTCAGATCAAGGTGAGACCTTTATGAGGCCTAGTTCAAGGCCTTGTACAGCAGCTAGCAAGCCAGTTATAGCAGCTTCTGTTGAAGCAACAAATGTGTCAGGAGTTGAGAGTAATGGAACTAGCTCAGGGTTTCCTTCTTCAAGTAAGTCTTTGTGTTTTGCCCCAAGACCAGGTTATGGGCAACTTGGGACAAAATGCATTGTAAAAGCAAACCATTTTTTGGCTGATTTTCCAGACAAAGAGTTGAATCAGTATGATGTTACTGTAATCCCTGAAGTGTCATCAAGAACTGTAAACAGAGCTATCATGGCAGAGCTGGTGAAACTGTACAAAGAATCCCACCTAGGGATGAGATTACCAGCTTATGATGGCAGAAAGAGTCTTTACACTGCTGGTGAACTTCCTTTTAAGTGGAAGGAGTTTACCATTAAGCTTATTGATGAAGATGATGTGATCAATGGTCCAAAGAGAGAGAGAGAATATAAAGTGGTGATTAAGTTTGTTGCAAGAGCAAATCTACATCATCTGAGTGAATTTCTTGCTGGTAAGCGCGCTGACGGTCCAAAAGAAGCTCTTCAAATTCTGGACATTGTTTTGAGAGAGCTTTCGATCAAGAGGTATTGTCCAGTTGGAAGATCTTTCTTTTCACCTGATATACGGAAGCCTCAACCTCTTGGTGATGGTTTAGAAGCATGGTGTGGATTCTACCAGAGCATTAGACCGACCCAAATGGGCTTGTCGCTTAACATTGATATGGCTTCAGCTGCATTTATTGAAGCTCTACCAGTGATAGAGTTTGTAGCTCAGCTTCTAGGAAAAGATGTGTCGTCAAGACCCTTATCTGACTCGGATCGTGTAAAGATTAAGAAGGCTCTTAGAGGAGTGAAAGTTGAAGTGACACACAGGGGCAATGTCCGGAGAAAGTATCGTGTTTCAGGACTAACAACTCAGCCCACGAGGGAACTAGTATTTCCTGTTGATGACAATTTAACCATGAAGTCGGTTGTTGAATACTTTCAAGAAATGTATGGCTTTACTATAAAGAATACACATCTTCCATGCCTTCAAGTAGGGAACCAAAAGAAAGCCAACTATTTACCTATGGAGGCGTGTAAAATTGTTGAGGGACAACGATACACCAAAAGGTTGAGTGAGAAGCAAATTACTTCTCTTTTGAAGGTCACATGCCAAAGACCAAGAGATCGTGAGAACTCAATCTTGCAGACTGTTCAACACAATGATTATAATGAAGACCCATATGCTAAGGAGTTTGGAATCAAAATCAGTGAAAAGCAAGCATCTGTGGAAGCCCGTGTGTTGCCTGCTCCTTGGCTAAAATATCACGAGACGGGGAAGGAGAAGGATTGTCTACCTCAAGTTGGGCAGTGGAATATGATGAACAAGAAAATGATAAATGGGATGACAGTCAACCGTTGGGCATGCATCAACTTTTCACGAAGTGTCCAAGAGAGTGTTGCTCGTGGCTTTTGTAACGAACTCACTCAGATGTGTCAAGTATCTGGAATGGAGTTCAATCCGGACCCAATAATTCCAATATACATGGCCAGGCCAGATCAAGTAGAGAAAGCCTTGAAGCATGTATATCATTCATGCGTAAACAAGCTAAAAGGAAAAGAACTTGAGCTTCTGTTGGTCATTCTACCAGATAACAATGGTTCCCTCTATGGTGACATAAAGCGGATATGTGAGACTGATCTCGGTTTAATAACCCAATGCTGTCTGACAAAGCATGTATTCAAGATCAGCAAACAATATTTGGCAAATGTATCCTTGAAGATCAACGTCAAGATGGGTGGTCGAAATACCGTCCTGTTGGATGCTATTAGCTGTAGAATACCATTAGTAAGTGATATACCTACCATCATATTCGGAGCAGATGTGACCCACCCTGAAAACGGAGAAGATTCTAGCCCTTCAATTGCAGCTGTAGTAGCTTCTCAAGATTGGCCTGAGGTGACAAAATACGCCGGTCTTGTTTGCGCTCAAGCTCATAGACAAGAACTTATACAAGATTTGTACAAGACATGGCATGATCCTGCACGTGGAACAGTTAGTGGTGGCATGATAAGGGATCTTCTTATATCCTTCAGAAAGGCCACAGGCCAAAAGCCACAAAGGATAATCTTTTATCGGGATGGAGTGAGTGAAGGTCAATTTTACCAAGTACTGCTTTTCGAGTTAGATGCAATTAGGAAGGCTTGTGCGTCTTTAGAACCAAATTATCAACCGCCAGTAACTTTTATCGTGGTACAGAAACGACATCACACCCGACTATTTGCAAATAATCACAAGGACAGGAGCAGCATTGATAGGAGTGGAAACATATTGCCTGGTACTGTGGTTGATACAAAAATCTGTCATCCAACAGAATTCGACTTCTATCTTTGTAGCCACGCTGGCATTCAGGGTACGAGCCGGCCTGCACATTACCATGTTCTGTGGGATGAAAACAATTTCACAGCAGACGGAATCCAGTCCTTGACTAACAATCTCTGCTATACATATGCAAGATGCACACGTTCTGTCTCTGTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATTTCGAGCCAGATTCTACATGGAACCAGACATGCCTGAAACTAATTCAGGCAGCCCTCATCAAGGCAGCAGCAAGGCTATACGAGAGACGGGTGTTAGGCCATTGCCCGCTCTTAAAGAAAATGTGAAGAGAGTGATGTTTTATTGTTAGGAAGAAGAGATAACAAGTGAGTAGCAAATGTAACAAATAGTAAGTAGGGGGTTCAGTTCAGACCACATGAATCTTTGTTTGTAAATGTATGTTGATCATCCTAGGTTAATTGTCATGTTAGTTTTAATGATGTAAAGCGGCTTTATTTTCAATTAATGGTAATTAGTTTAGCATTATAGCCAGGTTA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc09g082830.2.1 | SL2.50ch09:68491234..68497388 | 983 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc09g082830.2 | SL2.50ch09:68491048..68497492 | 6,445 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc09g082830.2.1.1 | SL2.50ch09:68496918..68497492 | 575 | - | n/a |
| exon | exon:Solyc09g082830.2.1.10 | SL2.50ch09:68493981..68494052 | 72 | - | n/a |
| exon | exon:Solyc09g082830.2.1.11 | SL2.50ch09:68493560..68493682 | 123 | - | n/a |
| exon | exon:Solyc09g082830.2.1.12 | SL2.50ch09:68493287..68493446 | 160 | - | 2 |
| exon | exon:Solyc09g082830.2.1.13 | SL2.50ch09:68493077..68493198 | 122 | - | n/a |
| exon | exon:Solyc09g082830.2.1.14 | SL2.50ch09:68492846..68492983 | 138 | - | n/a |
| exon | exon:Solyc09g082830.2.1.15 | SL2.50ch09:68492620..68492762 | 143 | - | 1 |
| exon | exon:Solyc09g082830.2.1.16 | SL2.50ch09:68492461..68492523 | 63 | - | 1 |
| exon | exon:Solyc09g082830.2.1.17 | SL2.50ch09:68492234..68492297 | 64 | - | n/a |
| exon | exon:Solyc09g082830.2.1.18 | SL2.50ch09:68492011..68492146 | 136 | - | 2 |
| exon | exon:Solyc09g082830.2.1.19 | SL2.50ch09:68491858..68491931 | 74 | - | n/a |
| exon | exon:Solyc09g082830.2.1.2 | SL2.50ch09:68496300..68496508 | 209 | - | 1 |
| exon | exon:Solyc09g082830.2.1.20 | SL2.50ch09:68491646..68491772 | 127 | - | 2 |
| exon | exon:Solyc09g082830.2.1.21 | SL2.50ch09:68491048..68491416 | 369 | - | n/a |
| exon | exon:Solyc09g082830.2.1.3 | SL2.50ch09:68495612..68495761 | 150 | - | 1 |
| exon | exon:Solyc09g082830.2.1.4 | SL2.50ch09:68495395..68495528 | 134 | - | 2 |
| exon | exon:Solyc09g082830.2.1.5 | SL2.50ch09:68495157..68495266 | 110 | - | n/a |
| exon | exon:Solyc09g082830.2.1.6 | SL2.50ch09:68494912..68495018 | 107 | - | 1 |
| exon | exon:Solyc09g082830.2.1.7 | SL2.50ch09:68494657..68494795 | 139 | - | n/a |
| exon | exon:Solyc09g082830.2.1.8 | SL2.50ch09:68494452..68494568 | 117 | - | n/a |
| exon | exon:Solyc09g082830.2.1.9 | SL2.50ch09:68494143..68494250 | 108 | - | n/a |
| intron | intron:Solyc09g082830.2.1.10 | SL2.50ch09:68494053..68494142 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.11 | SL2.50ch09:68493683..68493980 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.12 | SL2.50ch09:68493447..68493559 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.13 | SL2.50ch09:68493199..68493286 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.14 | SL2.50ch09:68492984..68493076 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.15 | SL2.50ch09:68492763..68492845 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.16 | SL2.50ch09:68492524..68492619 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.17 | SL2.50ch09:68492298..68492460 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.18 | SL2.50ch09:68492147..68492233 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.19 | SL2.50ch09:68491932..68492010 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.2 | SL2.50ch09:68496509..68496917 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.20 | SL2.50ch09:68491773..68491857 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.21 | SL2.50ch09:68491417..68491645 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.3 | SL2.50ch09:68495762..68496299 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.4 | SL2.50ch09:68495529..68495611 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.5 | SL2.50ch09:68495267..68495394 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.6 | SL2.50ch09:68495019..68495156 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.7 | SL2.50ch09:68494796..68494911 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.8 | SL2.50ch09:68494569..68494656 | n/a | - | n/a |
| intron | intron:Solyc09g082830.2.1.9 | SL2.50ch09:68494251..68494451 | n/a | - | n/a |
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