Solanum lycopersicum mRNA Solyc09g074950.2.1

mRNA details  
Name
Solyc09g074950.2.1
Type
mRNA
Length
4,048
Organism
Solanum lycopersicum
Description
Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core
Location(s)
SL2.50ch09:66745933..66760740
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006508
  • GO:0005524
  • GO:0017111
Length
14808
Nb exon
27
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc09g074950.2.1 Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core

ATGGTTGAGACCAGAAGAAGTTCTTCTTCATCAAAGCGTTCGCTTTCACCATCATCATCTTCTCTTCAGAATAATGGCAAGCGGTCTAAGGGTGGGGTAAATGATTCAGGGCCGGAATCTGCTGAGCAAGAGGTTCGATCAGCTGATCTCGTAGGAGCCAGTGTTTTGAAATCATCGGATGATGCTGCTGCTACTCCGGCTGCTGCTGCTGCGCCACAGAAATCGATGGAAACTGAAGGGGCAAACGAGCCTTTGGTATCACCGATGACTTTAGGTGATTCTGCGATTGATGTGGATAAATCCAAGTCAAACGGGTCGGCATTGAACCGGGGAAAGAAGCGGCAGCTGAAATCTAATGGTGCTGCATGGGGTAAACTTCTTTCGCAGTGCTCGCAGAATCCTCATCTTGTCATGCATCGCCCAACGTATACTGTAGGTCAAAGTCGTGAAAGTGACTTGTGGATAGGAGATTCTACAGTTAGTAAAGATTTATGTAATCTCAAGCACACTGAGACAGAGAAAGGGGTATCCATTACTCTTCTTGAAATTACGGGGAAAAAAGGCGATGTGCAAGTCAATGGCAAGGTCTACCCAAAGAATTCTACTGTTCCTCTCAAAGGAGGTGATGAGGTTGTTTTTGGCTCATCTGGTCAACATGCTTACATCTTTGATAACGACTTATCTGCTACAAGTTTGGCCCATCCTGTTAGCATATTGGAAGCTCATAGTGGATCAATCAAGGGACTCCATCTTGAGGCAAGGTCTGGGGATCCCTCCACTGTAGCAGTTGCATCGACCCTAGCATCTTTGTCAAATCTACGGAAAGACTTGTCCCTTCTCCCACCATCATCTCAAAATGGTAAGGATGGAAAACAAGGTTCAGAGGTGCCAATACTACCCTCTGCAAGTGGTCTGAGTCTGACAGAGAAAGATGATTTAGATACTGATATGAAGGATGCTTCTGATGGTAATGACGAACCTGGTGTTTTGGTGGATGAGAAGAATGATGTAATATCTCCTGGCGTTGAGAATGGTAACTTGAATCTTGATAATGTTGTACTAGATTCAGTTGATGCAGAGATTGGGAAGGTGCAACCTCTCCTTCAAGTGCTTGCTGGATCTTCTGCTTCTGAGTTCGATTTGAGTGGTAGCATTTCCAAAATTTTTGAGGAGCAAAGGAATTTCCGAGAACTACTCAAGGATTTTGATCGTCCAGTTTCTGCTTTAACTAGGCGCCAAACATTTAAAAATGCCTTACAGCAAGGAGTAGTTGATTTCAACACTATTGATGTCACATTTGAAAATTTTCCATATTACTTATGTGAAAATACAAAGAATGTTCTGATTGCTTCCACTTATATACACTTGAAGTGTAACGGGTTTGCAAAATTTGCATCAGATCTTCCCACAGTGTGCCCTAGGATTTTGCTATCAGGTCCAGCAGGTTCAGAGATTTATCAGGAGACATTGGCCAAAGCACTTGCTAAGTACTTTTGTGCTAAGCTAATGATAGTTGATTCTCTCTTGCTGCCTGGTGTTTCAAGTTCCAAAGATGTCGAGCCTGTTAAAGTAAGCTCAAAACCAGAGAGAGCTAGTGTATTTGCTAAACGTGCGGCGCAAGCGGCAGCATTGCATCTGAATAAAAAGCCGGCTTCAAGTGTTGAGGCTGATATAACTGGTGGTTCAATTTTAAGTTCTCATGCTCAGCCCAAGCAGGAGGCATCGACTGCCTCATCAAAAAACTATACTTTTAAGAAAGGTGATAGAGTGAAGTACATCGGATCTTTAACATCAAGCTTTTCTCCGTTGCAATCACCTATAAGGGGTCCAACATATGGTTACAGGGGCAAAGTGGTTCTTGCATTTGAGGAAAATGGGTCCTCTAAAATTGGTGTCAGATTTGATAGATCAATTCCTGAGGGTAATGATCTTGGTGGCCTGTGCGATGAAGATCATGGGTTCTTTTGTGCTGCTGACTTGCTCCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGAGGTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAAGTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCCAGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAATCGCATCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGCCTTCCCAGATAATTTTGGTAGGTTGCATGATAGAAGCAAAGAAACCCCCAAGACGATGAAGCAGCTCACACGACTGTTTCCCAACAAAGTTACCATACAGATCCCTCAGGACGAAACCTTATTATCCGACTGGAAGCAAAAGTTAGATCGGGATATGGAAACTATGAAATCTCAGTCAAACATTGCAAGCATTCGCAATGTTTTGAATCGATTCAAAATTAATTGCGATGACCTTGAAATTCTATGCATAAAGGATCAAGCACTGACAAATGAAAGTGTTGAAAAGATAATCGGCTGGGCTTTGAGTCATCACCTTATGCATAAATCTGAGTCTGCTATGAAAGAGACGAAGCTAGCTATCTCCAGTGAAAGCATTGCTTATGGGCTCAGTATGTTTCAAGGCATTCAGGGTGAAACGAAGAGTTTGAAGAAATCCCTCAAGGACGTGGTTACTGAAAATGAGTTCGAGAAGAAACTACTTGGGGATGTAATTCCGCCGAGTGATATTGGTGTTACTTTTAATGACATTGGGGCGTTGGAAACTGTCAAGGATACTCTGAAAGAACTGGTGATGCTGCCTCTTCAGCGACCAGAATTGTTTTGTAAAGGACAGCTGACCAAGCCTTGCAAGGGAATATTGCTCTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCGAAAGCTGTTGCTACTGAGGCTGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCCAAGTGGTTCGGTGAAGGGGAGAAGTATGTCAAAGCAGTCTTCACATTAGCTAGTAAAATAGCTCCGAGTGTTATTTTCGTTGACGAGGTGGACAGCATGTTGGGAAGACGAGAAAATCCGGGAGAGCATGAAGCTATGCGGAAGATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGTACAAAAGATAAGGAACGGGTTCTTGTACTTGCTGCAACAAATAGACCCTTTGACCTGGATGAAGCAGTTATTAGGAGGCTTCCCCGTAGGTTAATGGTAAACTTGCCAGATGCTTCAAATAGGGAGAAAATTTTGGGAGTTATTTTGGCGAAGGAAGAATTAGCCCCAAATGTCGATTTAGAAGCTATTGCTACTATGACGGACGGGTATTCAGGGAGTGATTTGAAGAATTTGTGTGTGAGCGCTGCGCATTGCCCTATTAGAGAAATTTTGGAGAAGGAGAAGAAGGAGAAAACATTGGCAATTGCAGAGAGCAGGCCATCACCGGCTTTGCATAGTAGTGCAGACATTCGTCCTCTTAACATGGATGATTTTAAGTATGCACATGAGCAGGTATGTGCCAGTGTGTCATCAGAGTCTTCAAATATGAATGAGCTTCTCCAGTGGAATGATTTATATGGAGAAGGAGGATCAAGAAAGAAAACATCTCTCAGTTACTTCATGTAGAGGAGATATGTTTAACTATATAGCAAGGCATTGGTTTATTTGTTTTCCTGTTCTGCAACCCGCGATAACAGCATTGCGTGGATAATCCATTTCAGGTTCCCCAAAGTCCAATTGGCCTTGGCCCCTGACCCCCCCTTTTGTATCATACTTAGTTGATAGGATTTTTTTCCAGTTGCAAGTCCTGAAGTCTCACCCAATTTTTCTCATTTTTAGCTCTCTTCTCTGTACATATGAGTTGAGTAATTTAAGAAAAAGCATATCCTAATATTCTTTTTCTGCATTTGAGCTTTTTTGTATAGTTTGATATCTTCTGATGGAGTAGGCCTTGTTCTAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc09g074950.2.1SL2.50ch09:66745932..667604061,238+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc09g074950.2SL2.50ch09:66745933..6676074014,808+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc09g074950.2.1.1SL2.50ch09:66745933..6674602290+n/a
exonexon:Solyc09g074950.2.1.10SL2.50ch09:66753265..6675332864+2
exonexon:Solyc09g074950.2.1.11SL2.50ch09:66753639..66753787149+1
exonexon:Solyc09g074950.2.1.12SL2.50ch09:66753906..6675397671+2
exonexon:Solyc09g074950.2.1.13SL2.50ch09:66754060..66754233174+n/a
exonexon:Solyc09g074950.2.1.14SL2.50ch09:66754319..6675439072+n/a
exonexon:Solyc09g074950.2.1.15SL2.50ch09:66756360..66756461102+n/a
exonexon:Solyc09g074950.2.1.16SL2.50ch09:66756537..6675662690+n/a
exonexon:Solyc09g074950.2.1.17SL2.50ch09:66757042..6675711776+n/a
exonexon:Solyc09g074950.2.1.18SL2.50ch09:66757210..6675730697+2
exonexon:Solyc09g074950.2.1.19SL2.50ch09:66757436..6675750570+1
exonexon:Solyc09g074950.2.1.2SL2.50ch09:66746288..66746471184+n/a
exonexon:Solyc09g074950.2.1.20SL2.50ch09:66757609..66757788180+n/a
exonexon:Solyc09g074950.2.1.21SL2.50ch09:66757942..66758064123+n/a
exonexon:Solyc09g074950.2.1.22SL2.50ch09:66758141..6675822484+n/a
exonexon:Solyc09g074950.2.1.23SL2.50ch09:66758392..66758576185+n/a
exonexon:Solyc09g074950.2.1.24SL2.50ch09:66758684..66758822139+1
exonexon:Solyc09g074950.2.1.25SL2.50ch09:66758906..6675896560+n/a
exonexon:Solyc09g074950.2.1.26SL2.50ch09:66759224..66759328105+n/a
exonexon:Solyc09g074950.2.1.27SL2.50ch09:66760293..66760740448+n/a
exonexon:Solyc09g074950.2.1.3SL2.50ch09:66746563..66746684122+2
exonexon:Solyc09g074950.2.1.4SL2.50ch09:66750312..66750434123+n/a
exonexon:Solyc09g074950.2.1.5SL2.50ch09:66750582..66750725144+n/a
exonexon:Solyc09g074950.2.1.6SL2.50ch09:66750833..66751491659+n/a
exonexon:Solyc09g074950.2.1.7SL2.50ch09:66751664..66751785122+1
exonexon:Solyc09g074950.2.1.8SL2.50ch09:66751871..6675196292+2
exonexon:Solyc09g074950.2.1.9SL2.50ch09:66752896..66753118223+n/a
intronintron:Solyc09g074950.2.1.1SL2.50ch09:66746023..66746287n/a+n/a
intronintron:Solyc09g074950.2.1.10SL2.50ch09:66753329..66753638n/a+n/a
intronintron:Solyc09g074950.2.1.11SL2.50ch09:66753788..66753905n/a+n/a
intronintron:Solyc09g074950.2.1.12SL2.50ch09:66753977..66754059n/a+n/a
intronintron:Solyc09g074950.2.1.13SL2.50ch09:66754234..66754318n/a+n/a
intronintron:Solyc09g074950.2.1.14SL2.50ch09:66754391..66756359n/a+n/a
intronintron:Solyc09g074950.2.1.15SL2.50ch09:66756462..66756536n/a+n/a
intronintron:Solyc09g074950.2.1.16SL2.50ch09:66756627..66757041n/a+n/a
intronintron:Solyc09g074950.2.1.17SL2.50ch09:66757118..66757209n/a+n/a
intronintron:Solyc09g074950.2.1.18SL2.50ch09:66757307..66757435n/a+n/a
intronintron:Solyc09g074950.2.1.19SL2.50ch09:66757506..66757608n/a+n/a
intronintron:Solyc09g074950.2.1.2SL2.50ch09:66746472..66746562n/a+n/a
intronintron:Solyc09g074950.2.1.20SL2.50ch09:66757789..66757941n/a+n/a
intronintron:Solyc09g074950.2.1.21SL2.50ch09:66758065..66758140n/a+n/a
intronintron:Solyc09g074950.2.1.22SL2.50ch09:66758225..66758391n/a+n/a
intronintron:Solyc09g074950.2.1.23SL2.50ch09:66758577..66758683n/a+n/a
intronintron:Solyc09g074950.2.1.24SL2.50ch09:66758823..66758905n/a+n/a
intronintron:Solyc09g074950.2.1.25SL2.50ch09:66758966..66759223n/a+n/a
intronintron:Solyc09g074950.2.1.26SL2.50ch09:66759329..66760292n/a+n/a
intronintron:Solyc09g074950.2.1.3SL2.50ch09:66746685..66750311n/a+n/a
intronintron:Solyc09g074950.2.1.4SL2.50ch09:66750435..66750581n/a+n/a
intronintron:Solyc09g074950.2.1.5SL2.50ch09:66750726..66750832n/a+n/a
intronintron:Solyc09g074950.2.1.6SL2.50ch09:66751492..66751663n/a+n/a
intronintron:Solyc09g074950.2.1.7SL2.50ch09:66751786..66751870n/a+n/a
intronintron:Solyc09g074950.2.1.8SL2.50ch09:66751963..66752895n/a+n/a
intronintron:Solyc09g074950.2.1.9SL2.50ch09:66753119..66753264n/a+n/a
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http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17935232%2Fdetails feature 17935232
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