Solanum lycopersicum mRNA Solyc09g007540.2.1

mRNA details  
Name
Solyc09g007540.2.1
Type
mRNA
Length
3,500
Organism
Solanum lycopersicum
Description
Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia
Location(s)
SL2.50ch09:1126820..1139864
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005840
  • GO:0005737
  • GO:0000166
Length
13045
Nb exon
22
Sifter term
  • GO:0042802
  • GO:0004832
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc09g007540.2.1 Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia

ATGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTCTGGAATTGGAAGAATGAGTACGGGGGTACCATACTACAGCAATTACGTCGCCTGGGTGCGTCACTTGATTGGTCTCGTGAGTGCTTTACCATGGATGAGAAAAGGTCTAAGGCTGTAACTGAAGCATTTGTTAGGCTTTCCAATGAAGGTCTTATATACAGGGCTCCACGTATGGTGCATTGGGATTGTGTCTTGCGTACTGCAATCTCTGATATTGAGGTTGAATATACAGACATCAAAGAGAGGACACTTCTGAATGTTCCTGGATATGAAGAACCCGTGGAGTTCGGGTTGCTGACCTCATTTGCTTACCCCTTAGAAGGCGATCTTGGTGAAATTGTTGTGGCGACCACCAGAATTGAAACTATGCTTGGTGATACTGCAATTGCTATACATCCTGAAGACAAAAGATACAGTCACCTTCATGGGAAATTTGCTATTCATCCATTCAATGGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAGATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAGATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAGGTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAAATTGCCAGTCTAATGTTTTCTG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc09g007540.2.1SL2.50ch09:1126819..11395951,077+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc09g007540.2SL2.50ch09:1126820..113986413,045+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc09g007540.2.1.1SL2.50ch09:1126820..11268223+n/a
exonexon:Solyc09g007540.2.1.10SL2.50ch09:1130127..113021084+n/a
exonexon:Solyc09g007540.2.1.11SL2.50ch09:1130315..113039480+n/a
exonexon:Solyc09g007540.2.1.12SL2.50ch09:1130524..113058158+1
exonexon:Solyc09g007540.2.1.13SL2.50ch09:1130661..1130963303+n/a
exonexon:Solyc09g007540.2.1.14SL2.50ch09:1131060..1131230171+n/a
exonexon:Solyc09g007540.2.1.15SL2.50ch09:1133532..1133731200+n/a
exonexon:Solyc09g007540.2.1.16SL2.50ch09:1134131..1134536406+1
exonexon:Solyc09g007540.2.1.17SL2.50ch09:1135011..1135262252+n/a
exonexon:Solyc09g007540.2.1.18SL2.50ch09:1135351..1135851501+n/a
exonexon:Solyc09g007540.2.1.19SL2.50ch09:1136389..1136495107+n/a
exonexon:Solyc09g007540.2.1.2SL2.50ch09:1126908..112695851+n/a
exonexon:Solyc09g007540.2.1.20SL2.50ch09:1137393..1137492100+1
exonexon:Solyc09g007540.2.1.21SL2.50ch09:1138217..1138365149+n/a
exonexon:Solyc09g007540.2.1.22SL2.50ch09:1139430..1139864435+1
exonexon:Solyc09g007540.2.1.3SL2.50ch09:1127033..112710169+n/a
exonexon:Solyc09g007540.2.1.4SL2.50ch09:1127315..112737460+n/a
exonexon:Solyc09g007540.2.1.5SL2.50ch09:1127631..1127800170+n/a
exonexon:Solyc09g007540.2.1.6SL2.50ch09:1127902..112797473+1
exonexon:Solyc09g007540.2.1.7SL2.50ch09:1129381..112944666+n/a
exonexon:Solyc09g007540.2.1.8SL2.50ch09:1129528..112961184+n/a
exonexon:Solyc09g007540.2.1.9SL2.50ch09:1129758..112983578+n/a
intronintron:Solyc09g007540.2.1.1SL2.50ch09:1126823..1126907n/a+n/a
intronintron:Solyc09g007540.2.1.10SL2.50ch09:1130211..1130314n/a+n/a
intronintron:Solyc09g007540.2.1.11SL2.50ch09:1130395..1130523n/a+n/a
intronintron:Solyc09g007540.2.1.12SL2.50ch09:1130582..1130660n/a+n/a
intronintron:Solyc09g007540.2.1.13SL2.50ch09:1130964..1131059n/a+n/a
intronintron:Solyc09g007540.2.1.14SL2.50ch09:1131231..1133531n/a+n/a
intronintron:Solyc09g007540.2.1.15SL2.50ch09:1133732..1134130n/a+n/a
intronintron:Solyc09g007540.2.1.16SL2.50ch09:1134537..1135010n/a+n/a
intronintron:Solyc09g007540.2.1.17SL2.50ch09:1135263..1135350n/a+n/a
intronintron:Solyc09g007540.2.1.18SL2.50ch09:1135852..1136388n/a+n/a
intronintron:Solyc09g007540.2.1.19SL2.50ch09:1136496..1137392n/a+n/a
intronintron:Solyc09g007540.2.1.2SL2.50ch09:1126959..1127032n/a+n/a
intronintron:Solyc09g007540.2.1.20SL2.50ch09:1137493..1138216n/a+n/a
intronintron:Solyc09g007540.2.1.21SL2.50ch09:1138366..1139429n/a+n/a
intronintron:Solyc09g007540.2.1.3SL2.50ch09:1127102..1127314n/a+n/a
intronintron:Solyc09g007540.2.1.4SL2.50ch09:1127375..1127630n/a+n/a
intronintron:Solyc09g007540.2.1.5SL2.50ch09:1127801..1127901n/a+n/a
intronintron:Solyc09g007540.2.1.6SL2.50ch09:1127975..1129380n/a+n/a
intronintron:Solyc09g007540.2.1.7SL2.50ch09:1129447..1129527n/a+n/a
intronintron:Solyc09g007540.2.1.8SL2.50ch09:1129612..1129757n/a+n/a
intronintron:Solyc09g007540.2.1.9SL2.50ch09:1129836..1130126n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17919329%2Fdetails feature 17919329
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