Sol Genomics Network

Solanum lycopersicum gene Solyc09g005630.2

Name Solyc09g005630.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc09g005630	Length 1,936

Description

Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant

Location(s)

SL2.50ch09:435347..437282

GFF source

ITAG_eugene

From BOGAS: 1

Length: 1936

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc09g005630.2.1	SL2.50ch09:435347..437282	1,484	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc09g005630.2 SL2.50ch09:435347..437282
GGTGAACTTACATTAAGCATTATTTCATCATGGGATGGGCAAAATATGCCAGAGGAAAGCTATCTTTGCCTGTAATAACAGGAATTTTCTGTGCACTAACATTCATTGTTTTATTGTACACTGAAAGGATCACTACTTCTTCTTCTGGTTTCCATTTTGGGATCAAAACTTGTCCGAGACGAAATGCTGCAAAGTTAAAAAAACATCATACAGGTGCACTTGCAGCTTCTTTATTTTTTTTCAATCAGATTTTTTGTTGTCATGCTAAATGTGGCTTAACAGGTGTTATTAGAGAGTTGAAGAGCAGTCCACTAGACAATCCAACAGATGATAGGTTCGTGTTTGATCCCGAGGAATGCAGCCTCAATAACGGGAAATGGGTGTTTAATACTACGATTAAGCCACTATACACAGATAGAACTTGTCCATATATTGACAGACAATATTCTTGTACTAAGAATGGACGAGACGATTCAGATTATCTTCACTGGGAATGGCGGCCTGATGACTGCATCTTGCCAAGGTTGGCAAGTTAATCAAAATGTCATTAGATACATAGTACTGTCACTATCTGTTATCTCGATTATTGATACAACATCGTTAAACTAAATTCTTAACAATGAAATGCAGGTTTGATCCGACGATTGCCCTTAGAAAACTCCAAGGGAAGAGGATAATGTTTGTAGGAGACTCAATACAGAGAAATATGTGGGAATCTTTTGTGTGTTTGGTTCAATCTGTGATTCCAGAAGGCGAAAAGTCTATGAAACTAGGACAGGTTTATTCAGTCTTTAAAGCTAAGGTAATCAATCAATCATCAAGTCCAAAAAAAATCTGTCCTTTTTCAAGAATTTGCTCAAACATGAAGATTTTTGTTTGCTAAATATTTCGAACATACCTCAGGAATACAATGCCAGCATTGAATTCTACTGGGCACCATTCTTGGTTGAGTCAAACACAGATATTCATATAAAAGCCGATTCAAAACAGAGAATCATCAAAGTGGATTCTATCACCGAGCGTGCCAAACAGTGGTTAGGAGTAGATTACCTTGTTTTCAATACTTATGTTTGGTGGATGAGTGGCCTTAAAGCCAAAGCATTGTAAGTAAATGAATTCATTTTCCCAAAAAAATGTCGAAACAAAAGAACTTCTACTTGCATTTTTTCAAATGACTTCTCGAAAAAAAAAATGCAGATGGGGAGAGTTTGCAAATGGCGAAGAGGGATATGAAGAATTCGATACTCCTATTCCTTACAAGCTAGCATTGAGGACATGGGCAAATTGGATTGATTCAACCATCGATACTAATAAAACAAAGGTGTTCTTTACCACTATGTCACCTACGCACCAAAGGTACGTCTCTAATGCACATTACCTGCTACTACGAATGCTTTCTCATTTGACTATTTTAACCGAACTTGTTTGAGCATTCAGAAATGAAGATTGGGGGAATATGAACGGTACGAGGTGTTTCAATGAGACAAGACCTGTGATGAAGAAGGGACACTGGGGAGTTGGTTCAAACAAAGATTTAATGAAGGCAGTAGTTGATGTAATAGGAAGGATGAAAGTTGCTGTTACTGTTCTTAACATAACACAATTATCTGAGTACAGAATTGATGGACATGCTTCGGTTTACGGTGAATTAGGAGGCAAATTGTTGACTGATAAACAGAAAGCAGAGCCTTCACATTTTGCAGATTGTATACATTGGTGTTTGCCTGGAGTTCCAGATACTTGGAATAGAATGCTTTATGCATATTTGTAGCAAAAAACAACACTAATGAGAGAACAAGAAAAAAAGAATGTAAACACTCTCATGTTAGAAAAAAACATACTTTGTTTTTTGTTTGCAAAATTGTATGAATTTCTTGTAAAGTACATTGAATCAATATGGCAAAGTAAATGAAAGTTGCCTACAAAGTTGTTGAAA

Download sequence region

Download sequence (1.9Kb)

Get flanking sequences on SL2.50ch09

mRNA Solyc09g005630.2.1

Ontology terms

None

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc09g005630.2.1	SL2.50ch09:435375..437117	430	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc09g005630.2	SL2.50ch09:435347..437282	1,936	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc09g005630.2.1.1	SL2.50ch09:435347..435559	213	+	n/a
exon	exon:Solyc09g005630.2.1.2	SL2.50ch09:435629..435869	241	+	n/a
exon	exon:Solyc09g005630.2.1.3	SL2.50ch09:435977..436148	172	+	2
exon	exon:Solyc09g005630.2.1.4	SL2.50ch09:436250..436449	200	+	1
exon	exon:Solyc09g005630.2.1.5	SL2.50ch09:436544..436702	159	+	n/a
exon	exon:Solyc09g005630.2.1.6	SL2.50ch09:436784..437282	499	+	1
intron	intron:Solyc09g005630.2.1.1	SL2.50ch09:435560..435628	n/a	+	n/a
intron	intron:Solyc09g005630.2.1.2	SL2.50ch09:435870..435976	n/a	+	n/a
intron	intron:Solyc09g005630.2.1.3	SL2.50ch09:436149..436249	n/a	+	n/a
intron	intron:Solyc09g005630.2.1.4	SL2.50ch09:436450..436543	n/a	+	n/a
intron	intron:Solyc09g005630.2.1.5	SL2.50ch09:436703..436783	n/a	+	n/a

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Related views

Genetic loci

Tomato locus Solyc09g005630

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17918301%2Fdetails feature 17918301

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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