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Solanum lycopersicum mRNA Solyc08g014000.2.1

mRNA details  
Name
Solyc08g014000.2.1
Type
mRNA
Length
2,940
Organism
Solanum lycopersicum
Description
Lipoxygenase (AHRD V1 **** Q43190_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant
Location(s)
SL2.50ch08:3516113..3522693
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0046872
  • GO:0055114
Length
6581
Nb exon
9
Sifter term
GO:0016165
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc08g014000.2.1 Lipoxygenase (AHRD V1 **** Q43190_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant

TTTCACAACAAAAACTCATCATATCTTTTTATACTTTTTAATATTTCTCTTATTCATCATCATGTTAGGTCAACTTGTGGGTGGATTAATTGGTGGCCATCATGACTCAAAGAAAGTTAAAGGAACTGTGGTGATGATGAAGAAAAATGCTCTAGATTTTACTGATCTTGCTGGCTCTTTGACTGATAAAATCTTTGAAGCCCTTGGCCAAAAGGTTTCTTTTCAATTAATTAGTTCTGTTCAAAGTGATCCTGCAAATGGCTTACAAGGGAAACATAGTAATCCAGCCTATTTGGAGAACTTTCTCCTTACTCTAACACCATTAGCAGCTGGTGAAACAGCCTTTGGTGTCACATTTGATTGGAATGAGGAGTTTGGAGTTCCAGGTGCATTTGTCATAAAAAATATGCATATCAATGAGTTCTTTCTCAAGTCACTCACACTTGAAGATGTGCCTAATCATGGCAAGGTCCATTTTGTTTGCAATTCTTGGGTTTATCCTTCTTTTAGATACAAATCAGATAGAATTTTCTTTGCAAATCAGCCATATCTCCCAAGTGAAACACCAGAGCTTTTGCGAAAATACAGAGAAAATGAATTGGTAACATTAAGAGGAGATGGAACTGGAAAGCGCGAGGCGTGGGATAGGATTTATGACTATGATGTCTACAATGACTTAGGTAATCCTGATCAAGGTAAAGAAAATGTTAGAACTACCTTAGGAGGTTCTGCTGACTACCCGTATCCTCGGAGAGGAAGAACTGGTAGACCACCAACACGAACAGATCCTAAAAGTGAAAGCAGGATTCCACTTATTCTGAGCTTAGACATCTATGTACCGAGAGACGAGCGTTTTGGTCACTTGAAGATGTCAGACTTCCTAACATATGCATTGAAATCCATTGTTCAATTCATCCTCCCTGAATTACATGCCTTGTTTGATGGTACCCCTAACGAGTTCGATAGTTTTGAGGATGTACTTAGACTATATGAAGGAGGGATCAAACTTCCTCAAGGACCTTTATTTAAAGCTCTTACTGATGCTATTCCTCTAGAGATGATAAGAGAACTCCTTCGAACAGACGGTGAAGGAATATTGAGATTTCCAACTCCTCTAGTGATAAAAGATAGTAAAACCGCGTGGAGGACTGATGAAGAATTTGCAAGAGAAATGCTAGCTGGAGTTAATCCTGTTATAATTAGTAGACTTGAAGAATTTCCTCCAAAAAGCAAGCTAGATCCTGAACTATATGGAAATCAAAACAGTACAATTACTGCAGAACACATAGAGGGTAAGCTGGATGGACTAACGATTGATGAGGCGATCAACAGTAATAAACTTTTCATATTGAACCATCATGATGTTCTTATACCATATTTGAGGAGGATAAACACTACAACAACGAAAACATATGCCTCGAGAACTTTGCTATTCTTGCAAGATAATGGATCTTTGAAGCCACTAGCAATTGAATTGAGTTTGCCACATCCAGATGGAGATCAATTTGGTGTTACTAGTAAAGTGTATACTCCAAGTGATCAAGGTGTTGAGGGCTCTATCTGGCAATTGGCTAAAGCTTATGTTGCGGTGAATGACTCTGGTGTTCATCAACTGATTAGTCATTGGTTGAATACACATGCTGTGATCGAGCCATTTGTGATTGCAACAAACAGGCAACTAAGTGTGCTTCACCCTATTCATAAGCTTCTATATCCTCATTTCCGGGACACAATGAATATTAATGCTTTGGCAAGACAGATCCTAATCAATGCTGGTGGAGTTCTTGAGAGTACAGTTTTCCCTTCCAAATTTGCCATGGAAATGTCAGCTGTCGTTTACAAAGACTGGGTCTTCCCTGATCAAGCCCTTCCAGCTGATCTTGTTAAGAGGGGAGTAGCAGTTGAGGACTCGAGTTCTCCTCATGGTGTTCGTTTACTGATAGATGACTATCCATACGCTGTTGATGGCTTAGAAATCTGGTCTGCAATCAAAAGTTGGGTGACAGATTACTGCAGTTTCTACTACGGATCGAATGAAGAGATTTTGAAAGACAATGAACTACAAGCGTGGTGGAAGGAAGTCCGAGAAGTGGGACATGGTGACAAGAAAAATGAACCATGGTGGGCTGAAATGGAAACACCACAAGAGCTAATCGATTCGTGTACAACCATCATCTGGATAGCTTCTGCACTTCATGCAGCAGTCAATTTCGGGCAGTATCCTTATGCAGGTTACCTCCCAAATCGTCCCACAGTAAGTCGAAAATTCATGCCTGAACCAGGTACTCCTGAATACGAAGAGCTAAAGAAAAACCCCGATAAGGCATTCTTGAAAACCATCACAGCGCAGTTACAAACATTGCTTGGTGTTTCCCTCATAGAGATATTGTCAAGGCATACCACAGATGAGATATACCTCGGACAACGAGAGTCTCCTGAATGGACAAAGGACAAAGAACCACTCGCTGCTTTCGAAAGATTTGGAAATAAGTTAACAGACATTGAAAAACAGATTATGCAGAGGAATGGTAACAACATATTGACAAACAGAACAGGCCCCGTTAACGCTCCGTATACGTTGCTGTTCCCAACAAGTGAAGGTGGACTTACAGGCAAAGGAATTCCAAACAGTGTGTCAATATAGAAGAGTTTTGAGTACACATGAAAATGAAGAAAGCTGGAGTTTGAATGAATCTTCAAATAAAATTGATCATTACTGTATGTTCATTTCTCCTAAGTTTACTGTATTTTCTTTTCAACCTTACTTGTTATGTAATTCTCAGTATGTTGTGAGAATAATAAAACTAATTCCAGCTGAAAAGTTTCAATATATTTTGCAATTAAGCAAGTTTCCAATGTTAAATTTGATAAGATTCAAAAATGGATTAATGAGAAGATATGGTAATTACAGGATAATTCTTCATTGGTAAAAAAGTCAAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc08g014000.2.1SL2.50ch08:3516408..3522632861-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc08g014000.2SL2.50ch08:3516113..35226936,581-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc08g014000.2.1.1SL2.50ch08:3522440..3522693254-2
exonexon:Solyc08g014000.2.1.2SL2.50ch08:3519804..3520093290-n/a
exonexon:Solyc08g014000.2.1.3SL2.50ch08:3518918..3519158241-2
exonexon:Solyc08g014000.2.1.4SL2.50ch08:3518478..3518819342-2
exonexon:Solyc08g014000.2.1.5SL2.50ch08:3518312..351839786-n/a
exonexon:Solyc08g014000.2.1.6SL2.50ch08:3518085..3518192108-n/a
exonexon:Solyc08g014000.2.1.7SL2.50ch08:3517704..3518008305-1
exonexon:Solyc08g014000.2.1.8SL2.50ch08:3517233..3517496264-1
exonexon:Solyc08g014000.2.1.9SL2.50ch08:3516113..35171621,050-n/a
intronintron:Solyc08g014000.2.1.2SL2.50ch08:3520094..3522439n/a-n/a
intronintron:Solyc08g014000.2.1.3SL2.50ch08:3519159..3519803n/a-n/a
intronintron:Solyc08g014000.2.1.4SL2.50ch08:3518820..3518917n/a-n/a
intronintron:Solyc08g014000.2.1.5SL2.50ch08:3518398..3518477n/a-n/a
intronintron:Solyc08g014000.2.1.6SL2.50ch08:3518193..3518311n/a-n/a
intronintron:Solyc08g014000.2.1.7SL2.50ch08:3518009..3518084n/a-n/a
intronintron:Solyc08g014000.2.1.8SL2.50ch08:3517497..3517703n/a-n/a
intronintron:Solyc08g014000.2.1.9SL2.50ch08:3517163..3517232n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17896041%2Fdetails feature 17896041
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