Sol Genomics Network

Solanum lycopersicum gene Solyc07g054580.2

Name Solyc07g054580.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc07g054580	Length 3,844

Description

GH3 family protein (AHRD V1 ***- B9N2A3_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter

Location(s)

SL2.50ch07:62854900..62858743

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3844

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc07g054580.2.1	SL2.50ch07:62854900..62858743	1,961	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc07g054580.2 SL2.50ch07:62858743..62854900 (sequence from reverse strand)
CATTACATTACATATATACAATTTCTTCCTGCTGGCTGCATGCCTAGCAAAATATGACGAATATTAACTGTAAGGATAAAATAGAAACTGACATCATAGGATGGTTCGATGAAGTCGCCGACGATTCCGCCGTTGTTCAACGGCGGACGCTTCGGCGAATTCTTGAAATGAATCATGGTGTGGAGTATCTTAAGAAATGGATTGGAGATATTAAAATTGAAGAAATTGATGAAAATTTATTGGAGTCAACTTATGCTTCTTTAGTCCCTCTTGCTTCTCATGCAGATATTGAGCCTTTTACAAAGAGAATTGCTGATGGAGATACAACTCCTCTACTCACTCAACAACCCATTACAAATCTATCATTAAGGTGAGGGTTTCTTTTTTTATAGTACTTTTGTTTTTGTTTTTTTATAGTATTTTTGTTTACCTTAGTTTATACATGTTTAATTATGGAGCCTACTTTTGTGCCTTAATAATTTGGCTGCTACTAATTTGTTTCTTACACTAATAAGTAATTTTTTTTTTTTCAAATAAAAGTGGAAGTTTGTTTTAGTGATATTTTATTTGTTGTGGGAACTATGTTTAGTTCAGGAACCACAGATGGAAGACAAAAATTTGTGCCCTTTACCCACCATAGCTCTCAAACTACTCTTCAGATTTTCAAGTTGGCAGCAGCATATAGATCAAGGTATGATTTTTATTTTTATTTGGGAAAATACCCAAGTATCCCCTCGACTATGTCCGAAATCCCAGAGACACACTTATACTATACTAAGGTCCGACTACCCTCCTGAACTTATTTTATATGTAATTTTCTACCCCTTGTTAGCCTACGTGGCAATAGTTCGGAAAAAAAGTCAACCATCGTTGGTCCCACAAGATAGTGCCACGTAAGCTAAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGTAATAGAACCTTAGTATAATATAAGTGTGTCTCTGAGATTTCGAGCATAGGTTGAGGGGGTATTTGGGCATTATCCCTTCTTATTTTTTTACAAATTTTGGAGATTTTTAAGTTTTAGTGAAATTAAAAATAAGTGTTATCGAAACAAAAACTAATTTTTGGAAAGCTAAAAAAGACGAATACTTTTAATTTGGAAATTTTTGGTTAAGCGTAAATTGTTGTTCTAATATTGGCATAAAGTGTTTATATTAGAGAATTAAGATGTTTGGTCAAGCTTATAGGCAAAACATAAGTATTTTGAGTACTAGCAGAAAATGTTTTTTCGAGCGTGAAAATAATAACTTATCTATATAAACACTTTTAATATATTGATTTAACCCGAAGTAGATTGACCAAACAAAATCTTCTCATCATGAGTTAATTATTCTTAAATTTTACTGATTTTTGTATTAATTTTGCATGGTGGGGTGTCACAGGATATATCCAATAAGAAGAGGAGGAAGAATTCTTGAATTTATATATAGCAGCAAACAATGTAAAACAAAAGGAGGAATAATAGTAGGAACAGCCACAACACACTATTATGCTAGTGATGAATTCAAGATTAAACAACAGCAAACAAAGTCATTCACTTGTAGCCCTCAAGAAGTTATTTCATGTGGAGATTATAAACAATCAACATATTGTCACCTCCTTCTTGGCTTATATTTTTCACATGAAGTTGAATTTGTTACATCAGCTTTTGCTTATAGCATAGTTGAAGCATTTAGATCATTTGAAGAAATGTGGAAGGAATTGTGCCATGACATTAGGGAAGGTAGTCTTAGCTCAATAATCAACATTGATAAAGTCCGAAAATCTGTGTCAGGTATTGTTATTATCTCATCTAATAGTTTAAAGGGTGTATTTTTAATGACTTTTGTTATGTGTTGTGCGTACACCCTTGACCTTCACGTAACACGTAAAAAAATCTTTTTTTTTAAATATAACGAGTGACATTGAGATTTGAACAAAAGATCAACTAATTAGTTTGTAATGTTGTAGCATGTTAGACATCTTATCTAAAAGCTTGAACTTGTTGAAAAAAATACATTTTTATTTACTTCATTATATATATGTCTTCAATAAACACCTCTTAACGTGCTACACTCTTTCTTCTTTGGCTTAGTACGTATTATTCTTTTAATAATGAGTGGCAGGGAGACTTGAACAGAAGATTCCTAGCCTGCTCTGATATCAATATTGAAGTGTAGATATATGATAATACTATATGATCATCTATAAGCTTATACTGTTAGAAAAAAATACATTTTTAAGTACTTCTTTAACCCCCATACATGCTACACTTTCATCTTTTCCCTAGCATGTAAAAATTCATTTTAATAATGAGCGACAATGAGAGTTAAATATTAAGATCTTATATGAATACTAAAGTATATATATACATTATTACGTCATCTAAAAATTTAAACTGTTAATACAAAAATAATACTACATTTTTTAATTACTTCTTCATGTCTTCAACAGGTATCACTCAGCCTAATCCAGAGTTGGCTTCAAGAATTGAATCAATTTGTGTGGAGCTAGAAAGGGCAGATTGGTTTAGCATAATCCCAAAATTATGGCCAAATGCTAAATATGTTTACTCAATAATGACAGGATCAATGATGCCATATTTAACAAAATTAAGACATTATGCTGGGGAATTACCTCTAGTGAGTGCTGATTATGGATCCACTGAGAGTTGGATTGGAGTTAATTTGGATCCATCTAATCCACCAGAAAAAGTTACTTTTGCAGTTGTACCAACTTTTTCTTACTTTGAGTTTATACCCCTTTATAAACACAAGTCAAATTATAATTACCAAAACGTAAATCTTAATTCAACAAATGATGATTACATAGAAGGTAATTCGATGCCCTTGTGTCAAGTCAAGAGTGGACAACAATATGAAATCGTCATAACAACTTTTACAGGTACGTAAAATATATTAATTTTGTCAATTTTGATACTACATGCATGTAAATATTTCCATACATATCAGATTCAAAATTTAAAATTTCATTGTTTACTTGTGAAATTAGAGTCCCCTTGGGTACTAGGTGTCTTAACACCTTTACGGCTTGAATCTAAATTTAGTCAGATACTAAGTAGGGGAATAAACTAAAAAATTGGTTATGTTGACATATTAACAACTCATTTTATATATAACTAATTCCTATTTATTAAATTATATTATATTATTTCTACTTGCAGGTCTTTATAGATATAGATTAGGGGATGTGGTAGAAGTTGATGGTTTTTACAAGAAAACCCCTAAACTCAACTTCATATGCAGGAGAAATCTGATATTAGCAATAAACATCGATAAGAATACTGAAAAAGACCTCCAATTAGTAGTGGAGAGAGGCGCACGAATACTAAGCAAGGGCACAAGACGAGCCGAGCTAGTAGATTTCACGAGCCATGCAAACGTGACAAAGCAACCGGGTCACTATGTGATTTATTGGGAAATCAAAGGAGAAATCGATGAAAAGGTACTCGATGAGTGTTGTAGAGATATGGATGCTTCGTTTGTAGATCATGGTTATGTTGTGTCAAGAAGAACAAAATCCATTGGTCCATTAGAGTTATGCATTGTAGAGAGAGGCACTTTCAAGAAAATATTGGAATCTTACATAGGAAATGGGGCTGCATTGAGTCAATTCAAGACTCCTAGATGCACTAGCAACAAAGAGTTACTAAATATCCTCAATGTTTGTACCATTAAGAGGTTTTATAGCACAGCTTATGGGTAGTAAATTAGAATAATGTGGTGATTATGTATTCACGGTTCGTGATATCTTAATTTATGTGACATATTTTTATTTGTAATTTAAATAACTTGAATTTTAAAACCAACC

Download sequence region

Download sequence (3.8Kb)

Get flanking sequences on SL2.50ch07

mRNA Solyc07g054580.2.1

Ontology terms

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc07g054580.2.1 GH3 family protein (AHRD V1 ***- B9N2A3_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter
CATTACATTACATATATACAATTTCTTCCTGCTGGCTGCATGCCTAGCAAAATATGACGAATATTAACTGTAAGGATAAAATAGAAACTGACATCATAGGATGGTTCGATGAAGTCGCCGACGATTCCGCCGTTGTTCAACGGCGGACGCTTCGGCGAATTCTTGAAATGAATCATGGTGTGGAGTATCTTAAGAAATGGATTGGAGATATTAAAATTGAAGAAATTGATGAAAATTTATTGGAGTCAACTTATGCTTCTTTAGTCCCTCTTGCTTCTCATGCAGATATTGAGCCTTTTACAAAGAGAATTGCTGATGGAGATACAACTCCTCTACTCACTCAACAACCCATTACAAATCTATCATTAAGTTCAGGAACCACAGATGGAAGACAAAAATTTGTGCCCTTTACCCACCATAGCTCTCAAACTACTCTTCAGATTTTCAAGTTGGCAGCAGCATATAGATCAAGGATATATCCAATAAGAAGAGGAGGAAGAATTCTTGAATTTATATATAGCAGCAAACAATGTAAAACAAAAGGAGGAATAATAGTAGGAACAGCCACAACACACTATTATGCTAGTGATGAATTCAAGATTAAACAACAGCAAACAAAGTCATTCACTTGTAGCCCTCAAGAAGTTATTTCATGTGGAGATTATAAACAATCAACATATTGTCACCTCCTTCTTGGCTTATATTTTTCACATGAAGTTGAATTTGTTACATCAGCTTTTGCTTATAGCATAGTTGAAGCATTTAGATCATTTGAAGAAATGTGGAAGGAATTGTGCCATGACATTAGGGAAGGTAGTCTTAGCTCAATAATCAACATTGATAAAGTCCGAAAATCTGTGTCAGGTATCACTCAGCCTAATCCAGAGTTGGCTTCAAGAATTGAATCAATTTGTGTGGAGCTAGAAAGGGCAGATTGGTTTAGCATAATCCCAAAATTATGGCCAAATGCTAAATATGTTTACTCAATAATGACAGGATCAATGATGCCATATTTAACAAAATTAAGACATTATGCTGGGGAATTACCTCTAGTGAGTGCTGATTATGGATCCACTGAGAGTTGGATTGGAGTTAATTTGGATCCATCTAATCCACCAGAAAAAGTTACTTTTGCAGTTGTACCAACTTTTTCTTACTTTGAGTTTATACCCCTTTATAAACACAAGTCAAATTATAATTACCAAAACGTAAATCTTAATTCAACAAATGATGATTACATAGAAGGTAATTCGATGCCCTTGTGTCAAGTCAAGAGTGGACAACAATATGAAATCGTCATAACAACTTTTACAGGTCTTTATAGATATAGATTAGGGGATGTGGTAGAAGTTGATGGTTTTTACAAGAAAACCCCTAAACTCAACTTCATATGCAGGAGAAATCTGATATTAGCAATAAACATCGATAAGAATACTGAAAAAGACCTCCAATTAGTAGTGGAGAGAGGCGCACGAATACTAAGCAAGGGCACAAGACGAGCCGAGCTAGTAGATTTCACGAGCCATGCAAACGTGACAAAGCAACCGGGTCACTATGTGATTTATTGGGAAATCAAAGGAGAAATCGATGAAAAGGTACTCGATGAGTGTTGTAGAGATATGGATGCTTCGTTTGTAGATCATGGTTATGTTGTGTCAAGAAGAACAAAATCCATTGGTCCATTAGAGTTATGCATTGTAGAGAGAGGCACTTTCAAGAAAATATTGGAATCTTACATAGGAAATGGGGCTGCATTGAGTCAATTCAAGACTCCTAGATGCACTAGCAACAAAGAGTTACTAAATATCCTCAATGTTTGTACCATTAAGAGGTTTTATAGCACAGCTTATGGGTAGTAAATTAGAATAATGTGGTGATTATGTATTCACGGTTCGTGATATCTTAATTTATGTGACATATTTTTATTTGTAATTTAAATAACTTGAATTTTAAAACCAACC

Download sequence (2.0Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc07g054580.2.1	SL2.50ch07:62855004..62858690	601	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc07g054580.2	SL2.50ch07:62854900..62858743	3,844	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc07g054580.2.1.1	SL2.50ch07:62858374..62858743	370	-	1
exon	exon:Solyc07g054580.2.1.2	SL2.50ch07:62858053..62858154	102	-	1
exon	exon:Solyc07g054580.2.1.3	SL2.50ch07:62856936..62857327	392	-	2
exon	exon:Solyc07g054580.2.1.4	SL2.50ch07:62855827..62856276	450	-	2
exon	exon:Solyc07g054580.2.1.5	SL2.50ch07:62854900..62855546	647	-	n/a
intron	intron:Solyc07g054580.2.1.2	SL2.50ch07:62858155..62858373	n/a	-	n/a
intron	intron:Solyc07g054580.2.1.3	SL2.50ch07:62857328..62858052	n/a	-	n/a
intron	intron:Solyc07g054580.2.1.4	SL2.50ch07:62856277..62856935	n/a	-	n/a
intron	intron:Solyc07g054580.2.1.5	SL2.50ch07:62855547..62855826	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc07g054580

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17883630%2Fdetails feature 17883630

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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