Solanum lycopersicum mRNA Solyc07g042010.2.1
 mRNA details
|
| Name | Type |
Length
2,622
|
Organism |
|
Description
ATP-dependent DNA helicase (AHRD V1 *-** D8G648_9CYAN); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type
|
|
Location(s)
SL2.50ch07:54852447..54867740
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0006310
- GO:0008026
- GO:0005524
- Length
- 15294
- Nb exon
- 20
- Sifter term
- GO:0017116
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc07g042010.2.1 ATP-dependent DNA helicase (AHRD V1 *-** D8G648_9CYAN); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type
ATGGTTAATACATATGACATTCTTGGTTATGTAATTTTCGTAATTCAAATTACAAATCGAACCCCTAACTTCAAATTCCCAAATTTTATCTCATTTATATACTCTGTGCTTTCCCGGCAAAATCCTCTGTTCAGTTTCTTCTGCAGGAGTTATTTTTCAAGTTTTTGGTGGTAGAAATGAACAAATCACTATTACCCTTGCAAAGTAATTGTGGACGTGAGAAGAATGTGATTGGGAAGGAAGCTTTAGTCAAACTATTGAGATGGCATTTTGGACATTCTGATTTCAGGGGGAAGCAATTGGAAGCTATTGAAGCTGTGTTATCAGGAAGGGATTGCTTTTGCCTCATGCCAACTGGTGGAGGGAAATCCATGTGCTATCAGGTCCCCGCTTTGACAAAACCAGGAATTGTGCTTGTTGTTAGTCCTTTGATAGCTCTCATGGAAAATCAAGTTTCAACATTGAAAGAAAAAAGGATTCCTGCTGAATTTCTTTCTTCAACCCAGACAGTTCTAGTGAAAAACAAGATATACGAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAGGCACATTGCATCTCTTCATGGGGCCATGACTTCAGGCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAAAGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAGTTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTGCTGCATATCATGCTGGGCTGAACAATAAAATGCGGAGCTCTGTCTTGGATGACTGGATTTCTTCAAAAACACAAGTGGTTGTTGCAACTGTAGCTTTTGGGCACAAACAGCTGCTGAAATCTTGCTTCCGTTGCAGGATGGGTATAGATAGAAAGGATGTCAGAGTGGTCTGTCACTTCAATATTCCCAAATCAATGGAAGGCTTCTATCAAGAGTCAGGTAGAGCTGGACGTGATCAGTTGCCTTCCAGAAGTGTACTGTATTATGGAGTGGATGACCGTAGGAAAATGGAGTTTATTTTAAACAATACTAAAAGGAGTAAGGATGAGTCCTCAAGCTTGCAAGATAAATCTTCGAAGAAGTCCCTGGACGACTTCAAACAGATGGTTGAGTATTGTGAAGGGTCTGGTTGTCGTAGGAAAATGATACTTGAGAACTTTGGAGAGATGGTACCTGATTCTTTATGTGAAAAATCATGTGATGTGTGCAAGCATCCTAATCTAGTTACAAGTAACTTGGAGCAACTTAAAACTGCAACTGCTTTTCGGCAGAGAGGTGGATCTTCAAGAATATATATGACCAGTGGTTCAAGTCTTAATGCCGGAGAACAATTGTCAGAATTCTGGAACCGTGATGATGAAGCAAGTGGATCAGAAGAAGATATATCTGAATCTGATGATGCTCTGGATGCTGCAAAGAATGTCGCTTCATCAAAAACATCCGCAAAGCTCAGGTTGCAAGATAAAATGGATTTGCTGCAGCGTGCAGAAGAGAATTATTATCAGAACAAAAGCCATGATAAGCAGGTCAATAAACTTGACAAGAATGCCATACCTGAAAAACTCAGGGAAGCAGGCAAGCAGAGATTGCTGAATTCAATAAAGCAAAACCAGCAGATGGTCAATGATTCGAGGATTGACATTGATAAATCCGTAGTTTTCCTTGAAAATGAATGTTATAAGAAGTATGGCAAAAGTGGAAAGTCTTTCTATTTATCACAAATGGCAAGTACAGCTAGGTGGCTTTCTACAGCAGGTCCGATGGAATTGGTGAATAAGCTCAGCAGTTCTAGTACTGCTACTCCTCCTGAGAATGTAACATCCATAGCCGACTGCAGTCCAGCATCATCAAATATTTCGGTGCCTATATCAGCAAGGGCTAATGACGAAGAAGTCCATGGCAACGCTGGATCACAAGATCCAATAAGATCACCAGCCTCACCCTTGCATGGATCTGCAAGTGCAAAGTTACCACCCATCCTGTCTTTCTCTCAGTTTATCAACAGTGGGAAGGCAAAGGGGAACCTTGCATCTGCATCAAAGAGGCAATCACCCGATAGAGGTAAAAATAAGTTAGAGAAGAGGATGAGATTTCAATAGGTTGTTGATTCTTGATAAATCTGACTGCAGATTTTTGGCATAGCAAATCCATGTATATTAGCACAATTTTAGTGAGTGTTGTCATGGTATAAAAATTCTAAACGAATTTCTCAACTTTATGCTAACTTTGAAAACCTTTTTGCTTGTTAAACACAACATAAAAAATTTCTAATCACTAGACCTTAGCCTGGAGGTTTTGGGCTCAGGAGATTGCAGA
ATGGTTAATACATATGACATTCTTGGTTATGTAATTTTCGTAATTCAAATTACAAATCGAACCCCTAACTTCAAATTCCCAAATTTTATCTCATTTATATACTCTGTGCTTTCCCGGCAAAATCCTCTGTTCAGTTTCTTCTGCAGGAGTTATTTTTCAAGTTTTTGGTGGTAGAAATGAACAAATCACTATTACCCTTGCAAAGTAATTGTGGACGTGAGAAGAATGTGATTGGGAAGGAAGCTTTAGTCAAACTATTGAGATGGCATTTTGGACATTCTGATTTCAGGGGGAAGCAATTGGAAGCTATTGAAGCTGTGTTATCAGGAAGGGATTGCTTTTGCCTCATGCCAACTGGTGGAGGGAAATCCATGTGCTATCAGGTCCCCGCTTTGACAAAACCAGGAATTGTGCTTGTTGTTAGTCCTTTGATAGCTCTCATGGAAAATCAAGTTTCAACATTGAAAGAAAAAAGGATTCCTGCTGAATTTCTTTCTTCAACCCAGACAGTTCTAGTGAAAAACAAGATATACGAGGACATCGAATCTGGGAAGCCAGCTGTAAGGTTACTGTACGTGACACCAGAATTAATTGCGACATCTGGATTTATGTCAAAAATGACAAAGATTCATGCTAGAGGATTGTTAAATCTCATTGCCGTTGATGAGGCACATTGCATCTCTTCATGGGGCCATGACTTCAGGCCTAGCTATCGGAAGCTTTCTTCACTGAGAAGTCATTTCCCAAATGTACCAGTATTGGCTTTGACAGCAACTGCTGTCCCTAAAGTTCAGAAAGATGTCATAGAGTCATTGAATTTGCAAAACCCTCTAGTCCTGAAATCATCGTTCAACCGGCCAAATATCTATTATGAAGTTCGCTATAAAGACCTTTTGGATGATCCATATGCTGACGTGTGTAAATTACTAAAATCTTGTGGAAATGTGTGCGCTATTATTTATTGCCTGGAACGTACTATGTGTGATGATCTTGCGATCCATATAACCAGCAGCGGCATTTCTTGTGCTGCATATCATGCTGGGCTGAACAATAAAATGCGGAGCTCTGTCTTGGATGACTGGATTTCTTCAAAAACACAAGTGGTTGTTGCAACTGTAGCTTTTGGGCACAAACAGCTGCTGAAATCTTGCTTCCGTTGCAGGATGGGTATAGATAGAAAGGATGTCAGAGTGGTCTGTCACTTCAATATTCCCAAATCAATGGAAGGCTTCTATCAAGAGTCAGGTAGAGCTGGACGTGATCAGTTGCCTTCCAGAAGTGTACTGTATTATGGAGTGGATGACCGTAGGAAAATGGAGTTTATTTTAAACAATACTAAAAGGAGTAAGGATGAGTCCTCAAGCTTGCAAGATAAATCTTCGAAGAAGTCCCTGGACGACTTCAAACAGATGGTTGAGTATTGTGAAGGGTCTGGTTGTCGTAGGAAAATGATACTTGAGAACTTTGGAGAGATGGTACCTGATTCTTTATGTGAAAAATCATGTGATGTGTGCAAGCATCCTAATCTAGTTACAAGTAACTTGGAGCAACTTAAAACTGCAACTGCTTTTCGGCAGAGAGGTGGATCTTCAAGAATATATATGACCAGTGGTTCAAGTCTTAATGCCGGAGAACAATTGTCAGAATTCTGGAACCGTGATGATGAAGCAAGTGGATCAGAAGAAGATATATCTGAATCTGATGATGCTCTGGATGCTGCAAAGAATGTCGCTTCATCAAAAACATCCGCAAAGCTCAGGTTGCAAGATAAAATGGATTTGCTGCAGCGTGCAGAAGAGAATTATTATCAGAACAAAAGCCATGATAAGCAGGTCAATAAACTTGACAAGAATGCCATACCTGAAAAACTCAGGGAAGCAGGCAAGCAGAGATTGCTGAATTCAATAAAGCAAAACCAGCAGATGGTCAATGATTCGAGGATTGACATTGATAAATCCGTAGTTTTCCTTGAAAATGAATGTTATAAGAAGTATGGCAAAAGTGGAAAGTCTTTCTATTTATCACAAATGGCAAGTACAGCTAGGTGGCTTTCTACAGCAGGTCCGATGGAATTGGTGAATAAGCTCAGCAGTTCTAGTACTGCTACTCCTCCTGAGAATGTAACATCCATAGCCGACTGCAGTCCAGCATCATCAAATATTTCGGTGCCTATATCAGCAAGGGCTAATGACGAAGAAGTCCATGGCAACGCTGGATCACAAGATCCAATAAGATCACCAGCCTCACCCTTGCATGGATCTGCAAGTGCAAAGTTACCACCCATCCTGTCTTTCTCTCAGTTTATCAACAGTGGGAAGGCAAAGGGGAACCTTGCATCTGCATCAAAGAGGCAATCACCCGATAGAGGTAAAAATAAGTTAGAGAAGAGGATGAGATTTCAATAGGTTGTTGATTCTTGATAAATCTGACTGCAGATTTTTGGCATAGCAAATCCATGTATATTAGCACAATTTTAGTGAGTGTTGTCATGGTATAAAAATTCTAAACGAATTTCTCAACTTTATGCTAACTTTGAAAACCTTTTTGCTTGTTAAACACAACATAAAAAATTTCTAATCACTAGACCTTAGCCTGGAGGTTTTGGGCTCAGGAGATTGCAGA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc07g042010.2.1 | SL2.50ch07:54852663..54866319 | 686 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc07g042010.2 | SL2.50ch07:54852447..54867740 | 15,294 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc07g042010.2.1.1 | SL2.50ch07:54867580..54867740 | 161 | - | n/a |
| exon | exon:Solyc07g042010.2.1.10 | SL2.50ch07:54862204..54862356 | 153 | - | 2 |
| exon | exon:Solyc07g042010.2.1.11 | SL2.50ch07:54862028..54862124 | 97 | - | 1 |
| exon | exon:Solyc07g042010.2.1.12 | SL2.50ch07:54861841..54861880 | 40 | - | n/a |
| exon | exon:Solyc07g042010.2.1.13 | SL2.50ch07:54861592..54861741 | 150 | - | n/a |
| exon | exon:Solyc07g042010.2.1.14 | SL2.50ch07:54861402..54861494 | 93 | - | n/a |
| exon | exon:Solyc07g042010.2.1.15 | SL2.50ch07:54861242..54861307 | 66 | - | n/a |
| exon | exon:Solyc07g042010.2.1.16 | SL2.50ch07:54861007..54861140 | 134 | - | 1 |
| exon | exon:Solyc07g042010.2.1.17 | SL2.50ch07:54858445..54858539 | 95 | - | 2 |
| exon | exon:Solyc07g042010.2.1.18 | SL2.50ch07:54858193..54858320 | 128 | - | n/a |
| exon | exon:Solyc07g042010.2.1.19 | SL2.50ch07:54853238..54853344 | 107 | - | 1 |
| exon | exon:Solyc07g042010.2.1.2 | SL2.50ch07:54867031..54867196 | 166 | - | n/a |
| exon | exon:Solyc07g042010.2.1.20 | SL2.50ch07:54852447..54853129 | 683 | - | n/a |
| exon | exon:Solyc07g042010.2.1.3 | SL2.50ch07:54866232..54866339 | 108 | - | 2 |
| exon | exon:Solyc07g042010.2.1.4 | SL2.50ch07:54866097..54866104 | 8 | - | n/a |
| exon | exon:Solyc07g042010.2.1.5 | SL2.50ch07:54865926..54866009 | 84 | - | n/a |
| exon | exon:Solyc07g042010.2.1.6 | SL2.50ch07:54864356..54864496 | 141 | - | n/a |
| exon | exon:Solyc07g042010.2.1.7 | SL2.50ch07:54864233..54864267 | 35 | - | 1 |
| exon | exon:Solyc07g042010.2.1.8 | SL2.50ch07:54863323..54863406 | 84 | - | 1 |
| exon | exon:Solyc07g042010.2.1.9 | SL2.50ch07:54862991..54863079 | 89 | - | 2 |
| intron | intron:Solyc07g042010.2.1.10 | SL2.50ch07:54862357..54862990 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.11 | SL2.50ch07:54862125..54862203 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.12 | SL2.50ch07:54861881..54862027 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.13 | SL2.50ch07:54861742..54861840 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.14 | SL2.50ch07:54861495..54861591 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.15 | SL2.50ch07:54861308..54861401 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.16 | SL2.50ch07:54861141..54861241 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.17 | SL2.50ch07:54858540..54861006 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.18 | SL2.50ch07:54858321..54858444 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.19 | SL2.50ch07:54853345..54858192 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.2 | SL2.50ch07:54867197..54867579 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.20 | SL2.50ch07:54853130..54853237 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.3 | SL2.50ch07:54866340..54867030 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.4 | SL2.50ch07:54866105..54866231 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.5 | SL2.50ch07:54866010..54866096 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.6 | SL2.50ch07:54864497..54865925 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.7 | SL2.50ch07:54864268..54864355 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.8 | SL2.50ch07:54863407..54864232 | n/a | - | n/a |
| intron | intron:Solyc07g042010.2.1.9 | SL2.50ch07:54863080..54863322 | n/a | - | n/a |
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