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Solanum lycopersicum mRNA Solyc06g073780.2.1

mRNA details  
Name
Solyc06g073780.2.1
Type
mRNA
Length
3,965
Organism
Solanum lycopersicum
Description
Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal
Location(s)
SL2.50ch06:45526296..45545628
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0016887
  • GO:0005694
Length
19333
Nb exon
30
Sifter term
GO:0045502
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g073780.2.1 Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal

TAATCAAGCTTTGTCAAACACATTTCTCTTCCCATTCCCTCCAAAGTCCATACACCCCCACTTACACAGTCGCAGAACCTCCATTAACGACTAGCTCGGTCGCTCGCTCTAGAAATAGAGTAGTCAGGGACTGTCAACATGTATATAAAACAGGTCATCATTGAAGGGTATAAGAGTTATCGAGAACAAGTCGCCACTGAAGATTTCAGTCCAAAAGTTAACTGTGTTGTTGGTGCAAATGGATCTGGCAAGTCTAACTTCTTCCATGCAATCCGTTTTGTCATAAGCGACCTCTTTCACAATTTGCGCAGTGAAGAAAGACAGGCTTTGCTTCATGAAGGAGCAGGTCACCAAGTGTTATCTGCTTTTGTGGAAATTGTATTTGATAATTCGGACAATCGAATGCCGGTTGATAAGGAGGAAGTACGGCTGAGAAGAACAATCGGTCTCAAGAAGGATGAATATTTCTTGGATGGAAAACATATCACGAAGACAGAAGTCCAGAATTTGCTGGAAAGTGCTGGGTTTTCTCGGTCTAATCCTTATTATGTTGTGCAGCAGGGAAAGATAGCATCATTGACATTAATGAAGGATTCAGAACGACTTGATCTACTGAAGGAAATTGGAGGGACACGTGTTTATGAGGAGAGGCGTCGAGAAAGTTTAAAAATCATGCAGGAAACTGGTAACAAGAGAAAGCAAATTATTCAAGTTGTTCAATACTTGGACGAGAGATTGAATGAGCTTGAACAAGAGAAGGAGGAACTGAAAAAGTATCAGCAGCTTGACAAGCAGCGTAAATCTCTGGAATACACTATTTATGACAAAGAACTTCATGATGCACGTCAGAAATTGAACGAGGTAGAAGAGGCTCGAAACAAAGTTGCAGAGAACTCTACTAAGATGTATGAGAGTGTGCTGGAGGCTCATGAAAAGTCCAAGGAGCTGGAGAAGTTGTCCAAAGATCTGACAAAAGAAATTCAAATTTTAAGCAAGGAGAAAGAAGCAGTAGAGAAACAGCGGACAGAGGCTATTAGAAAGCGAGCCCAGCTTGATCTTGATTACAAAGACCTTCAAGAGAAGATGTCCACAAATATTAAAGCTAAAGATGATGCTCAGAAACAACTCATGATTCTGGAGCGAGAAGTTCAAGAAACAAAGAATTCACTCAATGATATCAAGCCTTTGCATGAGAAACAAGTAAAAGAGGAGGAGGACATCACTAGAGGGATTATGGATCGTGAAAAGAGACTTAGCATTCTTTATCAGAAACAAGGCCGTGCCACCCAATTTGCAAGCAAAGCTGCTCGGGACAAATGGCTTCAAAAAGAAATTGATGAATATGAGCGAGTTTTATCTTCAACCTTAATGCAGGAGAAAAAACTTCAAGATGAAATTGATCAGCTTAAAAATGACATGAGAGATCAAGATGATATAATCAAAGTTCGTAAAGTTGAAGTGGACAAAAAAGAAACCTTCATATCTGGTTATCGAAATGCTTATAATCAGTATAAAGTGGATAGAGACAAGCTGCATAATGAGCGGAAGTCTCTGTGGACACAGGAGACTGAACTGACTACTGAAATTGAACGGCTTAAAGCTGAAGTTGTGAAGGCTGAGAAAAGCCTAGATCATGCAACTCCTGGTGATATTAGAAGGGGTCTGAATTCTGTAAGGAGGATTTGCAGAGAGTATGAAATCTCTGGAGTGTTTGGACCAATTTTTGAGTTGCTTGAATGCGAGGACAAGTTTTTTACAGCTGTTGAAGTTACTGCTGGAAACAGCTTATTCCATGTGGTGGTTGATAATGATGAAACATCAACTAAAATTATTAGACACCTCAATGCCCAAAAAGGTGGACGAGTTACATTTATTCCATTGAACAGGGTTAAAAAACCATATGTTAATTATCCCCAGGGCTCTGATGTGATTCCGCTTCTGAAGAAATTGAGGTTTTCTGATTCATATAGTAGGGCATTTGAGCAGGTGTTTGCAAGAACTGTAATTTGTCGAAATCTGGATGTTGCCACCAGGGTTGCTCGTACCGATGGGCTTGACTGTATCACTCTGGAAGGTGACCAAGTTAGTAAAAAAGGTGGCATGACTGGTGGATTTTATGATCATAGACGCTCAAAACTGAGGTTTATGAGCACCATCAAACAGAATACAGTGTCCATCAACCTGAAGGAGCGTGAACTTGAGGAAGTTAGATATAAACTTCAAGATATCCTTACTGGGTTTCTTTACGTCTTAACATTGTCCATTACCCTTTTTACTTTACTGCGTTATTCTTTTCGATCTTTGCTAATACTATTTCTGAAGCTTTTCCCACAGATAGACCAGAAAATTAATGAACTTGTGGCTGAGCAGCAGAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGAAACAATCCATCTTAAAAGCTCTTCAAAAGAAGGAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAGACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAAGGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAGGCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGACGTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAGAAAATCAAGGAACTTATATCTGTTTTGGATGATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCATCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g073780.2.1SL2.50ch06:45526432..455451181,230-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g073780.2SL2.50ch06:45526296..4554562819,333-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g073780.2.1.1SL2.50ch06:45545517..45545628112-n/a
exonexon:Solyc06g073780.2.1.10SL2.50ch06:45542128..45542303176-n/a
exonexon:Solyc06g073780.2.1.11SL2.50ch06:45541255..45541500246-n/a
exonexon:Solyc06g073780.2.1.12SL2.50ch06:45541027..45541148122-1
exonexon:Solyc06g073780.2.1.13SL2.50ch06:45540460..45540604145-n/a
exonexon:Solyc06g073780.2.1.14SL2.50ch06:45535715..45535887173-1
exonexon:Solyc06g073780.2.1.15SL2.50ch06:45535515..45535614100-n/a
exonexon:Solyc06g073780.2.1.16SL2.50ch06:45534407..45534543137-1
exonexon:Solyc06g073780.2.1.17SL2.50ch06:45534075..45534276202-n/a
exonexon:Solyc06g073780.2.1.18SL2.50ch06:45533609..4553369688-2
exonexon:Solyc06g073780.2.1.19SL2.50ch06:45533275..45533522248-n/a
exonexon:Solyc06g073780.2.1.2SL2.50ch06:45545104..4554514441-n/a
exonexon:Solyc06g073780.2.1.20SL2.50ch06:45532001..45532162162-n/a
exonexon:Solyc06g073780.2.1.21SL2.50ch06:45531730..45531921192-n/a
exonexon:Solyc06g073780.2.1.22SL2.50ch06:45531464..45531647184-2
exonexon:Solyc06g073780.2.1.23SL2.50ch06:45531314..4553138471-n/a
exonexon:Solyc06g073780.2.1.24SL2.50ch06:45531088..45531239152-1
exonexon:Solyc06g073780.2.1.25SL2.50ch06:45529651..45529819169-n/a
exonexon:Solyc06g073780.2.1.26SL2.50ch06:45529520..4552954930-n/a
exonexon:Solyc06g073780.2.1.27SL2.50ch06:45527291..4552738393-n/a
exonexon:Solyc06g073780.2.1.28SL2.50ch06:45526904..45527078175-2
exonexon:Solyc06g073780.2.1.29SL2.50ch06:45526650..45526821172-1
exonexon:Solyc06g073780.2.1.3SL2.50ch06:45544909..4554498476-2
exonexon:Solyc06g073780.2.1.30SL2.50ch06:45526296..45526538243-n/a
exonexon:Solyc06g073780.2.1.4SL2.50ch06:45544774..4554481239-2
exonexon:Solyc06g073780.2.1.5SL2.50ch06:45544626..4554469368-n/a
exonexon:Solyc06g073780.2.1.6SL2.50ch06:45544471..4554454272-n/a
exonexon:Solyc06g073780.2.1.7SL2.50ch06:45542721..4554280080-1
exonexon:Solyc06g073780.2.1.8SL2.50ch06:45542554..4554263279-n/a
exonexon:Solyc06g073780.2.1.9SL2.50ch06:45542372..45542489118-2
intronintron:Solyc06g073780.2.1.10SL2.50ch06:45542304..45542371n/a-n/a
intronintron:Solyc06g073780.2.1.11SL2.50ch06:45541501..45542127n/a-n/a
intronintron:Solyc06g073780.2.1.12SL2.50ch06:45541149..45541254n/a-n/a
intronintron:Solyc06g073780.2.1.13SL2.50ch06:45540605..45541026n/a-n/a
intronintron:Solyc06g073780.2.1.14SL2.50ch06:45535888..45540459n/a-n/a
intronintron:Solyc06g073780.2.1.15SL2.50ch06:45535615..45535714n/a-n/a
intronintron:Solyc06g073780.2.1.16SL2.50ch06:45534544..45535514n/a-n/a
intronintron:Solyc06g073780.2.1.17SL2.50ch06:45534277..45534406n/a-n/a
intronintron:Solyc06g073780.2.1.18SL2.50ch06:45533697..45534074n/a-n/a
intronintron:Solyc06g073780.2.1.19SL2.50ch06:45533523..45533608n/a-n/a
intronintron:Solyc06g073780.2.1.2SL2.50ch06:45545145..45545516n/a-n/a
intronintron:Solyc06g073780.2.1.20SL2.50ch06:45532163..45533274n/a-n/a
intronintron:Solyc06g073780.2.1.21SL2.50ch06:45531922..45532000n/a-n/a
intronintron:Solyc06g073780.2.1.22SL2.50ch06:45531648..45531729n/a-n/a
intronintron:Solyc06g073780.2.1.23SL2.50ch06:45531385..45531463n/a-n/a
intronintron:Solyc06g073780.2.1.24SL2.50ch06:45531240..45531313n/a-n/a
intronintron:Solyc06g073780.2.1.25SL2.50ch06:45529820..45531087n/a-n/a
intronintron:Solyc06g073780.2.1.26SL2.50ch06:45529550..45529650n/a-n/a
intronintron:Solyc06g073780.2.1.27SL2.50ch06:45527384..45529519n/a-n/a
intronintron:Solyc06g073780.2.1.28SL2.50ch06:45527079..45527290n/a-n/a
intronintron:Solyc06g073780.2.1.29SL2.50ch06:45526822..45526903n/a-n/a
intronintron:Solyc06g073780.2.1.3SL2.50ch06:45544985..45545103n/a-n/a
intronintron:Solyc06g073780.2.1.30SL2.50ch06:45526539..45526649n/a-n/a
intronintron:Solyc06g073780.2.1.4SL2.50ch06:45544813..45544908n/a-n/a
intronintron:Solyc06g073780.2.1.5SL2.50ch06:45544694..45544773n/a-n/a
intronintron:Solyc06g073780.2.1.6SL2.50ch06:45544543..45544625n/a-n/a
intronintron:Solyc06g073780.2.1.7SL2.50ch06:45542801..45544470n/a-n/a
intronintron:Solyc06g073780.2.1.8SL2.50ch06:45542633..45542720n/a-n/a
intronintron:Solyc06g073780.2.1.9SL2.50ch06:45542490..45542553n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17859184%2Fdetails feature 17859184
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