Sol Genomics Network

Solanum lycopersicum gene Solyc06g063240.2

Name Solyc06g063240.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc06g063240	Length 4,513

Description

Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant

Location(s)

SL2.50ch06:39942092..39946604

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4513

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc06g063240.2.1	SL2.50ch06:39942092..39946604	1,766	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc06g063240.2 SL2.50ch06:39942092..39946604
CCGGACTTTTAGTTTTTATTGCTAGTAATTTAATCATTTATATATAAAACTCAGCATCCTAATACACATTTTCACTGTGAAGTTGCTGCTCCATGTTACACTGTACTTTCAACTTCTTCCATATTTGATTCCTTGTGAACAGAGCTGTTGTGGATCCGTGAGAAATGGCAGTGGATCCGAGACAAATTGTTGCTGGTGTTCTTACTGTTACTATGTTTGTTATGCTCGGCAACATGATCACGAGGGATCACTTTTATCCAGTAATTCCTCTCATATTCATGTTCTATCTATTTGATTTTGATGTTGTGTTCTGTGGATTTGTACATCTACATGAGCGGCTATTCTAACTGCATAATTACAGTTGCTGTTGCTCTTCATTTTGGCCGATTGATGCTTTGTTTTTGGCTTTGTTGAGTTGTTTGTTCTGCTGCTGCTTTAGATGTTACTCTGGTCTCTGATCCTATTATTATGTTTCTGGATTTCATTATATTGTTCGAACTGAATCGAACTATGCAGTATTTAACTCGTTTTGAAAAGATTCTAGTATTTTCAATCAACAAATATTCTCACCGGCAGTTGCAGCAAACTGTCACTACGGTTACCTAGTAGACTTCATAGTTTACTGAAAGATCCCGTGATTTCTGGCTTAGCCTTAGCTAAAAATGATTAATCTAATTAATTTCTGCATTTAGAGATTCTATAAGATTATGCCAAAAACAGATTAGAAAACAGTGTCTAGTGTCAATATTTGACTATGTGATATTCTTTGTTTAATTGTTTGGACATTTCTGATTTCCTTTGACCGTTTTCCTGCTGATGTAGGTGGATTCTGATATATCTATCCATAGTACCAGTAAGCAGAGCCTGGTAACTGGCCCTTGGATGAAGGGTGGTGAATCCGTAAAGCCTTGTTGGACTAAACCAGTTCCCCGTGAGTGATTTAATAATCTCGATTTTTTAAGGTTTATCTTTTATTATCTTATTTTCTTTTAAGAAATTTGTACATCTCTTATTCTATGATTTTCTCAACAGAAGAAGCTGACCAATCACAAGGATTTGTTACATTTTCACTTACTAATGGTCCTGAATATCATGTCTCTCAGGTAGCTTACTAGTGTTAGATCTTGAGTTTATCAAATAGCAGTAGGTGAATAATTACCTGCAATGTACTTGACAAACTAATTGCAAACTTTAGGTTCTATCTTTTAGTCAAGCATTTGTTTGCTGCAAATGGTATTTACAAGTTTGCTTTTGATGTTATTTGTTTTGTACATAATTTACTAATGTTTAGGATGATCCATCGAGACGTTCAACAGCAGAACTCAGCACCATTTTATCTCCTACTCATGTTGAGAACTGTAAAAGGAGCACAATACTGTCCCATTTCATGTTTTCGGAAAAACCTTATAAAACTACGTTATATGAGGCATAATTATCTATGAAGTGGAGAAATTACATTGTACATTCATTTTCTTGCTTTTTTGATTATGTTTACACTTGATAATTTGTTTCTTTTCACTCAACGGGTATTAATAATCGTCTAAGATTACTTGTCCACCTGACATTTTTAGTTGGTCTGTTTGCTTCTGATCTGAAATGATTGTGTGTATGGTGCTCTAGATTCCAGGCCATTCAAATATTTCAAGTGCTCATATGAATTGCATCTATTTCTTTTGTGTAGGGGTGCTATGCAGCATAGTTACTTTGATGGGTCTTTCTTTAATCCATATTTGATGTTCATTCTTCTTGGTTGAGATACTGTGACTACAGTTTCTGTCTCCATTCACATTTCTGTATGCCAGCATACAGCGGGTAGGGGGTGGATGGGATAGAAACTGAACTTTAAACCACTACTTGATATTTCTGTATTCCTTGTATCATGGTTATTTCTCATTAGCTTGGAGGAGTATCTGGCACTTTCTTAAATTACATCATCACTTCGCCTTACTGTTTATGCTCCCAGCAAAGTGCAGATTCTTGTAAATGTTATAGGATTAGTTAGACTTATACAGAGTTGTGTCTATGTTTGTCTTCTCTTCTATTGTCTTATTCTGTGTGGAACTGGCATGTTAGATTGCTGATGCAGTTATAGTGGCGAGGTATCTGCGTGCAACTCTTGTGATCCCAGACATCAGAGGGAGCAAACCTGGGGATAAGAGGTCAGTGTTCTCTATGTGTTTTCCCTATCTCTTGTTATTCTTGCAGAGTTTTAATGTTGTTTTAAATGAGAACTACTTAAGGAATTTGATCTGTATTTGACATTTATAAAGGTTACTTGAATTGTTCTTTCTCTATACACCGTCGGAACATCATATTTCTTGTGCTTGATATGCCCAGATGGAAACTCAGCTCACTTATGAGTCAAGATACTGCATTCATTTCTTTGGGAAAGATCTCCTTTATTATTTTCTTACATCTTCCTTATTTTCTTTTTCACTCCATTCCCAGTTTGGAAGAGCCTTGAACCGAGGGTCTATCTGAAACAACCTCTCTGTCTCTGAGGTAGGGGTAAGGTTAGCTTACACTCTACCCTCCCAAGACAGGACATTAGGTATGTTGCTGTTCCCAGCTTGGAAGAGCTTGTAAATAACCAATTAAAAGAGATTTTGCTCATGGCACATAGGTCTACCAATTTAATTTTTTTCTAGTCTCCTACTGCTCCTTTTCTCTTTCTTGGCCCTTATGATTATAAGTTGTACTTTATTGCTATTTTTTCTTATTCATGTGTCTGTTGCCTTTGTTTTAGAAAAGCTCGCGGCTTTAATTGTGTTTAAAGCCCTAGCAGACACTAGACACTTATCTACATTCTTTTATCTCCGATAACTCTAATTTGGAGATAGAGTCCTGAGCAGACATTGGATATGATTTTCATGAGCTATTCCTAGTTGAAGTTTCTGTCTGTAGAACTATAACCTTTGGAAGCTGGAAATTAGAGTTGTTAAAGCTGGAATTTTAGTGGCTTGCTTAATATTTGATGGCTCTTTCAAAATTTAATGGCTTTTCAGTACTGCTGATAATCTGTGAATTTTATCGATTTTTAGTTTTCATATCATCTTGGTCCACACTTATAGTCACCCAAAGTTTGAAGGTTCATGAAGGCCATTTGTGATTTTCAGGAAATTTGAAGACATCTACAATGTTGAACGCTTTGTGAGAAGCCTAGATGGTGTGGTTAAAGTAGAAACAACTCAGCCTGCTGAAGTCTCATCAAGAAATCTTGCTGTTGTGAAGGTTCCAAATAGGGTTTCTGAGGACTACATTGCTGAAAACATTGAACCAGTTTTCACATCTAAGGGAAACATAAGGCTGGCAACATACTTTCCTTCAGTAAACATGAAAAAAACGAAAGAGAAGAGTAATACCGACTCAATTGCATGTATGTCGATGTTTGGAACTCTAGAGCTTCAACCAGAAGTTAATGAAGTAGTTGAGTCCATGGTGGAGCGCTTAAGAACTTTGAGCTCAAAGTCAAAAGGACAGTTTGTTGCAGTGGATCTGAGGGTTGATATATTGGAGAAGAAGAGTTGCCAAGGTGACAGTTCTCTTAAATCAAAGAGCTGCTATGGTCCAGAGGAGATTGGTATGTTCTTGAGAAAAATTGGTTTTAACAAGGATACAACTCTATATCTGACTCAATCAAGGTGGGATAGCAGCCTTGATGCATTGAAGGATCTCTTTCCTAAAACATATACAAAGGTCTGGTTTCTTTACTTATTGTATTTACTGTTTCACAATATTTTGCTCTACTATCAGATTGCATGTTTAGAAAGTAAAAGAATCTATATGCTTCTATGTATCTCCATGTGTGCTTTTACTATTTGTGTTGCTTACTCCTCTGAAAACACAACTGCAGGAAAGCATAATGCCCATTGACAAGAAGGCAAAATTTCTCGACTCAGAGTCTTCTGAACTGGAGAAAGTAATCGACTTCTACATGTGTTCTGAGAGTGATGTTTTTGTACCAGCAATCTCAGGCCTCTTTTATGCCAATGTGGCTGGTAAGAGAATTGCTTCCGGAAAGACACAGATTCTTGTTCCAGCTGATATTCCTGGCTCTTCTGCTGCTTCGACTGATTACATATCCCATTATGTCTCAAAGAAGAACCACTTCGCCTATTCATGTTTCTGCTAGCTCCCTGTGAAGAAAGGCTGAAAAATGCAGATGGTTGAGATTGCGGATTTCTTCTACGTTATTCCTTGCACTTATGTTTGTAAGAAACACAGGTTTGTTTGGTTCATAGAATTAAGCCTACCATTTATTAGAGGTCTTGATGGAAAAGGTCAGGGCCACAAATAGTCGAATGTTGAATTTAGCATTTGTAGAGCAGATTTTATTTACATGTCAGTAAAGCTATTTCAAACAAAAACACTCGGCGTGTTGAATTTTTTTTGTTATGATTGTTGTCAACTCCATTCCAATCAATGGAGATTGGAGCGTCCCGTTATAAATAGTGAAATTAAATAGCCTATGGCCTTCTATTTACGATCTGTCATCATGTACTATTTACAGTTC

Download sequence region

Download sequence (4.5Kb)

Get flanking sequences on SL2.50ch06

mRNA Solyc06g063240.2.1

Ontology terms

None

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc06g063240.2.1 Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant
CCGGACTTTTAGTTTTTATTGCTAGTAATTTAATCATTTATATATAAAACTCAGCATCCTAATACACATTTTCACTGTGAAGTTGCTGCTCCATGTTACACTGTACTTTCAACTTCTTCCATATTTGATTCCTTGTGAACAGAGCTGTTGTGGATCCGTGAGAAATGGCAGTGGATCCGAGACAAATTGTTGCTGGTGTTCTTACTGTTACTATGTTTGTTATGCTCGGCAACATGATCACGAGGGATCACTTTTATCCAGTGGATTCTGATATATCTATCCATAGTACCAGTAAGCAGAGCCTGGTAACTGGCCCTTGGATGAAGGGTGGTGAATCCGTAAAGCCTTGTTGGACTAAACCAGTTCCCCAAGAAGCTGACCAATCACAAGGATTTGTTACATTTTCACTTACTAATGGTCCTGAATATCATGTCTCTCAGATTGCTGATGCAGTTATAGTGGCGAGGTATCTGCGTGCAACTCTTGTGATCCCAGACATCAGAGGGAGCAAACCTGGGGATAAGAGGAAATTTGAAGACATCTACAATGTTGAACGCTTTGTGAGAAGCCTAGATGGTGTGGTTAAAGTAGAAACAACTCAGCCTGCTGAAGTCTCATCAAGAAATCTTGCTGTTGTGAAGGTTCCAAATAGGGTTTCTGAGGACTACATTGCTGAAAACATTGAACCAGTTTTCACATCTAAGGGAAACATAAGGCTGGCAACATACTTTCCTTCAGTAAACATGAAAAAAACGAAAGAGAAGAGTAATACCGACTCAATTGCATGTATGTCGATGTTTGGAACTCTAGAGCTTCAACCAGAAGTTAATGAAGTAGTTGAGTCCATGGTGGAGCGCTTAAGAACTTTGAGCTCAAAGTCAAAAGGACAGTTTGTTGCAGTGGATCTGAGGGTTGATATATTGGAGAAGAAGAGTTGCCAAGGTGACAGTTCTCTTAAATCAAAGAGCTGCTATGGTCCAGAGGAGATTGGTATGTTCTTGAGAAAAATTGGTTTTAACAAGGATACAACTCTATATCTGACTCAATCAAGGTGGGATAGCAGCCTTGATGCATTGAAGGATCTCTTTCCTAAAACATATACAAAGGAAAGCATAATGCCCATTGACAAGAAGGCAAAATTTCTCGACTCAGAGTCTTCTGAACTGGAGAAAGTAATCGACTTCTACATGTGTTCTGAGAGTGATGTTTTTGTACCAGCAATCTCAGGCCTCTTTTATGCCAATGTGGCTGGTAAGAGAATTGCTTCCGGAAAGACACAGATTCTTGTTCCAGCTGATATTCCTGGCTCTTCTGCTGCTTCGACTGATTACATATCCCATTATGTCTCAAAGAAGAACCACTTCGCCTATTCATGTTTCTGCTAGCTCCCTGTGAAGAAAGGCTGAAAAATGCAGATGGTTGAGATTGCGGATTTCTTCTACGTTATTCCTTGCACTTATGTTTGTAAGAAACACAGGTTTGTTTGGTTCATAGAATTAAGCCTACCATTTATTAGAGGTCTTGATGGAAAAGGTCAGGGCCACAAATAGTCGAATGTTGAATTTAGCATTTGTAGAGCAGATTTTATTTACATGTCAGTAAAGCTATTTCAAACAAAAACACTCGGCGTGTTGAATTTTTTTTGTTATGATTGTTGTCAACTCCATTCCAATCAATGGAGATTGGAGCGTCCCGTTATAAATAGTGAAATTAAATAGCCTATGGCCTTCTATTTACGATCTGTCATCATGTACTATTTACAGTTC

Download sequence (1.8Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc06g063240.2.1	SL2.50ch06:39942255..39946223	407	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc06g063240.2	SL2.50ch06:39942092..39946604	4,513	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc06g063240.2.1.1	SL2.50ch06:39942092..39942351	260	+	n/a
exon	exon:Solyc06g063240.2.1.2	SL2.50ch06:39942914..39943022	109	+	n/a
exon	exon:Solyc06g063240.2.1.3	SL2.50ch06:39943124..39943194	71	+	n/a
exon	exon:Solyc06g063240.2.1.4	SL2.50ch06:39944165..39944250	86	+	2
exon	exon:Solyc06g063240.2.1.5	SL2.50ch06:39945208..39945787	580	+	n/a
exon	exon:Solyc06g063240.2.1.6	SL2.50ch06:39945945..39946604	660	+	1
intron	intron:Solyc06g063240.2.1.1	SL2.50ch06:39942352..39942913	n/a	+	n/a
intron	intron:Solyc06g063240.2.1.2	SL2.50ch06:39943023..39943123	n/a	+	n/a
intron	intron:Solyc06g063240.2.1.3	SL2.50ch06:39943195..39944164	n/a	+	n/a
intron	intron:Solyc06g063240.2.1.4	SL2.50ch06:39944251..39945207	n/a	+	n/a
intron	intron:Solyc06g063240.2.1.5	SL2.50ch06:39945788..39945944	n/a	+	n/a

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Related views

Genetic loci

Tomato locus Solyc06g063240

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17850232%2Fdetails feature 17850232

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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