Sol Genomics Network

Solanum lycopersicum gene Solyc06g053450.2

Name Solyc06g053450.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc06g053450	Length 6,593

Description

IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region

Location(s)

SL2.50ch06:36254859..36261451

GFF source

ITAG_eugene

From BOGAS: 1

Length: 6593

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc06g053450.2.1	SL2.50ch06:36254859..36261451	2,068	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc06g053450.2 SL2.50ch06:36254859..36261451
ATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGTAAGTTTTAAAAGTTTGGTTTCTTGAACTTGATATTCTCATATTACTTGTATCTGTCCCAGAAGTTGTTATTTTATGATGAAATAAACCAACTTCAATAATTGATGTAGTTTCTGTCAATCTAACTACTAATCCTGGTTGAGAATTGTGTTTATAAAGTGGACCAAGGGTGAACTAAGTATTTGGAAAAATTCAGCTCTGGCCTGATTTCCTTAAATATTCCCTTACAAATCATACTAAGATGGTGGGAAGAACTTGCTGGATATCTATGCTTCTAACATTATTATACAATCCTTAGCTAAGTTGGATGATTGTTACAGGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATGGTAAGATACAAGATAACTCCTTCATCAATGTTTTGCTGAAAATAGCCTTTAAGAATACTACTTGATTTTGTGAGTTGGCCAGATCTTGAGTGATAAGTCATAGGTCATGTTATTGCAAACTCATGATATATTGGTAACAATTATGTCATTGTTGAAACAACTTTAATAGTCTCCCAAGTAATCATTTCCATGTCTCCTGCAACTATTTGTTATTGCCGAAGGCGAGCATCAAGCTGAGAGAGTAGATCAATTATGTGAAAAGCTTTATGCTTTGTTAAAGACTTATGGCTCTCTTAGTCTAAAATTTAGGTGTTTCTTATGTGCGGAGACTCCCTGCTGTGTGTTAGAGAACTGGTAACAGGTAAATAAATTTCTAACCCTTCGATTAAAGCTCTGGATGAGTTCATTCAGTGGTCTCAGGGTGCATTTCTACCTAAGAAGTTTGTTTCTACCACAATCAGTATCTTGTTATTGCATTTTCACTTGATCCTTAGAAATGCTTTGACCTTTTATCATTAAGATTTTCCTTGTGATAGTTTTACCTGAGAATTTGATCTTCACGATTCCTTCTTAGTTCTTAAATGCTGAGCTTCCTCAATATTATATTTGACTGATTATTTAAAAGGTCACTTTCCTTGTCTGAGAACTCCATTTTTCTTTTCGAATTTTTGACAAAAATTAAGTTACATGCAGATTATCTGAAACGGGATACGAAAAAAAGAGATTTGAACTTTTGTATATGTAATTGGGACCCCCAATCTTTTCGTATGCTGTTTTCAAGAACCCATTTCCAGTCCTAATGACTTTACTGCTAGAGTAGTTTTCCTCAATGTCTTAATTATACTCTTGAACCATGGAAACTATGACTCCTGGACACTGCAGAACCTGAATTCTTAATTCTTGATTTAAAAAAAAACATGGAAATACAGAGTCTGCATTCATCTGTCATAAGCATCTTGAAAATTCGAGTAATTTTGTTCTTATCAACTTGTTAGAAAAACTTCTTATGTCAAAGAAAACAATATAGGATCTTATGTTATCATTATTATTTCCCTTGTCGTGATTCAAGTAGGAGTGAATAGAAGTTCATTGCTTTATATAATTTTTTTATTTTTTTATAAAAAAGAACCATAGGAGTCCTTTCCCATTTTCTCCCCTTTCTAGAGTAGGTCATTGATGGGACACGAATGTTTGGTTCAGAGAGTGTATCAATTGCTAACAAGTTTTACATATCCTATGTGAATGAACTTTGTTTTCACAGGCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTGGTAAGTTTAAGCTGCTACATATCTTGTGGTATTCACCTATTTAGTGGTATAGGCCGATGCCATATTTTGGAGGCACTGTTCGCCTACATTATTTAGTAGATTCAATTTGGGTCATTTAAATTGGGTAATGTTCCTCATTATTGGTGCTTTGATTATCTTGTGAAAGATTTGATGGATTCTTCCACTGGTCAAAGATGGTACGCAGCTTCTTCAACAATTCCAATTTAGGTTCTAGGAATTCATTTTTGTACATATATTGTAGTGTAAGGATATGAGAGTTGTTGAACAAAATTTCTTTTCGTCTTTGAACATTTTTTGAATTACGTTTGATGTTAAAAAGGAAATTTTGTTTTTAGACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAGGTACATTAGACTTGCGTTCTTAAGCATTTAAAATCTATGGTAACCATCGCGTAAATGTGCTTTTGATAATGCAGATATGTATCATTCTGTTTCATGCTTATTGTTGACACCCAATTTTGGCCTAACATTTTAAAGATTCATACCTTTTAAGTTTTATTAATTCAATAGTACAAAATACATTATTTACAATTTTAAATAACTCTTATCATTTTTATCCTTATTTCTCAAAATTTAGATTTTTATGAGTTAGTTTTTTAATTACATTATTTTTTGTAACAATCAATTGAATATATTATGAATATTGTGTCTTTGATTAAATCACTATTTTATGGTAAATTACATTTTTTTACATGCCATTTTTTTTTTTGGATAATAAAATTAAATGATATTAGAAAGCATCAAGAAGATGCGAAGTTACAAAAGCACAGTGTGCAAGAAAGCTGCTCCAAACAGAAAAATATGGAGCTATCTTGGCAAAAACTAGTGAAAACAGTCAATAGGGAACCCTACTACTCTACCCTTCTAGAGATAGGGAACTTACAAAATCCATTTTTTATTTGTTACTTCTACTTAAATCCATTTTGATGTTTTTAGCTGAGTCTAGAAATACAATTAAATACATAAAAGATTGCACACACAAATATTTTATTAGCTAGTGGTTTTAGCCCACGACTTTTAAGATAATGGTATTGTACTAAGGCGAATTTCAATTTTCTATTGAAACAATTTCTTAGTCATTAAGTTAGTGGTGGTGGATAATATTTTAGATAATGGCTGTAATTTTCAGATTTTTTAGTCTTTAAGAAACTTTTTTAGTGTTAGTATTTTCTTGGCAAACTTTTCGCCGGAGCTTCGCCTAGTCCACCACCAAAAGACCCCAACCATTTAGCCTTTTCTTTGTTATTTTCGGTTCTAACCGGAGGTTCCAACTCTTGCAAAACCCCTTTTGGTTTTATCTTTTTTTTTTTCTGTAGCAAACAACAAGCTACCAGTGATACCATACAACCACCAAAACGAAGTAAACCAGAACCTCAACCCACCTTTCTCTCCATTTCTTCCTCCACGTTGGAAGTCACCAAACACCCCCTTTTCTTGCACCTGAAACCGGGCGAGCTCACACCAGAGAATTCTGTTTACATCCCTACTTTATTCATATAAGAAGAAACATCTTGGTGACACAAAAATAATCAATTTATTCAATTCAATTAAACTTAAAAGAATTTTAGGAATAAACAAAATTTAAGGGAGTTGCCATCTAATTTTAGGAAAACTAGGAAACTACTTAAATGATCTACGAAACCAATAGATTCTAGGTAAGGGTTCAAGTAATTTCGAAGGAAAGGTGTTAGGCATCCTTCGAAGTTCACAATTGTGGGTCCAGACTCCAGACTGAATTTATTTTTTCAAATTGAGGAAGAGATAACAATAATATACAACTATGATAAAAATGCTATATACACAAATAATAAAATATTGCTATAATATGATAAACAGCCTAAGCTTGCCTAGCTTCAATTATACAAAATAATGAATAAAGAATATAATTCGAAGTTCGTTCGAATAGCTTCAATGGGAAGCAACTCTGGGTACCTATAAAGATGATGAATAATAATAAGAATTTTAAAATGTTACCTTCTCAAAAAAAAAAAAAAGAACTTAAAAAATTTCTAAATTACACCCCAAGTATGTAAACCTTATTCACCACCACTAACTTAATGGCCAAGAAATTCTTTAAATAGAAAATTGAAAGCCGTCTTAGTACAATACCACTATCTTAAAATCGTGGGCTAAAACCACTGGTTATAAAATATCTGTGTATGCAATCTTATCCGTATTTGAATGTATTTCTAGACTGCGCTAAAAACATAAAAAATAAATATTAATAAAAGTAACAAATAAAATAAATATTAATAGATTGTGACAAATAAAATGAATGACATATAAAAAATGCAATTTCATAATAAATAATGATTTAATCGAAGATACGATGTTCACAACATTGTGACACGAAAGAATAACTAAAATTAACTCATAAAAACCTGAAATTATGAGAAATAAGGATAAATATCGATAAAATTGTAAAAATGTATTTTGAACAATTGAATAAATAAAATTCACAAGGTACTGGAAAATGTTAAGCCAAAATTGGGTGTCAACACTTGTCACTTCCTTTATGTTGTACAAATCCTGGTATTAAGGGCATCATAACAATTTCTATCTGTCTATGGCCAAGTTATTGAGACATTTCTTTAGTGGTTCTCTTTCTTACCAAATCTTTTATCTAATGTGAATCCTGGTACTAAGTGCATCATAATAATCTCTCAGTTTGTTGCTTTTGACTAGTCTTTCATATTATCAAACTAAGATGCGCTTGTGCAAATTACAAGAACGTCAAAACTTTCAATTTTCTTGTTTCAACTTCCCATTAGTGATTCTGGCAAGAAACCGTTAGGTAAAACACATAATATCTCAATTGGTTCAAAGTACTTTATCATTATTTGTTATTCTTGGCCAAGACATGTTGACAAACTCTATACTTCTATTAGCCTTATATACGGCTTACCATGTTGCATACCTCTTTTTAATAGTTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTAGACTTATCTAGTGAAGGAAGAAAGGATAATTAGTATATTTTAAAGTTGGATCTCTCTCTACTTGTACTCTTTTATGCTAAATCATGTTATTGCTAACTTTATGTGGTCACCGATGGACGGTGAATGATGATTCATGTGAAGATTATCATATTTGATCTT

Download sequence region

Download sequence (6.5Kb)

Get flanking sequences on SL2.50ch06

mRNA Solyc06g053450.2.1

Ontology terms

terms associated with this mRNA

GO:0005516 – calmodulin binding

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc06g053450.2.1 IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region
ATGGGGGAAAAAGGCAGTTGGTTTTATGCCCTCAAAAGGGTTTTTACGTGTAACTCCAAGAAGAAGTCTGCCTATGGATCAGGGAAGAAAACTGCAAAGGAAAAGAAGAAGGGTCGTAGAATACTGAGGCATGGAGAGTTCAAATCATTCCTCTTCAGAGAACCAAGCAGTATTGAGAAAATACTGGGTGAGGTTGATGATCAGAACCTACTTGTTAGGCCTCCTACTTCTGAACAATCTGGCATTCCATCTGCATTCCCTGTGGCACCAACTTCTCCAAGAATCAATTCACCTAGAGATGCGTCTCCTCAGAGTTCTTATAGGGCTACATCTCCTGGTGTCACTTCTCCGAGGGTCGCCTCTCCAAGGGTTGTCTCTCCTAAGGCAGCTTCTCCAAAGGTTACCTCTCCCAAGGAAGCTTCTCCGAAGGTTACATCTCCCAGGGAAGCTTATCCAAAGGCTACCTCTGCTAGTGCTCCTTCCCTAAAGGCTCTCTCTCCTAGGGAAGCTTCTCCAAAGGCGAACTCTGCTAGTGCTCCTTCCCAGAAGGCTACTGCTCCCAAGGAGGCTTCTCCAAGGGTCTCTTCCCCTAGATCTACTTATCCAGAGCCGAGTAGGAACCATAATGAGATTAGCTATGCTAACAGGCCAGAAGCAACTTTGACGCTCCATCTTTCAGCAACCAAGATACAGGCAGCCTACAGAAGTTACATGGCAAGGAGGGGTTTCAAATCTTTGAGTGGTTTAGCAAGACTTCAAGGAGTGGTCAGAAGCAGAAGTGTAAAGCGGCAGACAGTAAATGCCATGAAACAAATGCAACTTCTAGGTAGGGTTCAAATGCAAATTCAGTCAAGGAGAAGTCAGATGTTCCAGGCACTCCATAGTCAAGCTTACATGAATGATAAAGAAGTTGAGAGCACTCTAAGCAAATGGACTCAGCTGACTGAAGCAGGTAACCATGATGATTGGAATAATAGTATGCTAACTAAAGATGAGGTAGAAGCAAGGCGACGGGAAAAAGTGGAGGCAGTCATCAAGAGGGAGAGAGCAATGAGCTATGCATATTCTCACCAGTTGTGGAGACGCAACCCCAAATCAGCTACGGACATCCGAACCAGTGGAATTCCTTGGTGGTGGAACTGGTTGCACCACCAGCTACTTCCAGGAAATGATTCCGAGAGCCAATCTGCTGTAAAAGATGTCCATTCAACACCATCAAGGGCAATATCCGAACACAAGCCAAGTCCATGGCGTCTAAGTCAAAACTTCAGACACCTCCATTTGGATTATGACAGTCATGAATCAGTTACACCAAGGTCAACTAAGTCTGCAGTTCCATTAAGGGGAAAACTAATGCATACTCCCAGAAGAACATCATCACCAATGAGCAGCTCAAGCGTATCAAAGTATTCAAGACGCCGTGCTAGTGCTGCTGATTCCCCTTTCAATCATTCCATGAAGGATGACGACAGCCTCACGAGCTGTCCTCCTTTTTCAGGTCCTAGTTACATGTCACCAACCATCTCAGCCAAAGCTAAATTCAGAGGAAAAACCATTCTTGAGGAGAGAAATATAGGTACTCCATCAAACAGCTCGAGGAGGAGGCTGTCGTTTCCTTTGACTCCAAGTAGTACTGGATCCGTCAAGTGGAACAAAGGATCTGGAAAGGATGCCGCTTCTTTAAAGGAACATGAATCTATGGGAGATCATATGAGTGTGCATTCTACTGGTTCGACGCCTACTATAGTTGGGAGGAAACCATTTCAAAGATTTGTGTAATTTTGTTCCCTGTATGTTGTCCCATCTGTATTTAGCTCTGAAGTTACCTATGTATGTGTATTTATTGGTGTATTTTGTTAACAGAACACTAATGTAAAATAATTAAGTGTGAACATTCTCTTGTTTGTTAGACTTATCTAGTGAAGGAAGAAAGGATAATTAGTATATTTTAAAGTTGGATCTCTCTCTACTTGTACTCTTTTATGCTAAATCATGTTATTGCTAACTTTATGTGGTCACCGATGGACGGTGAATGATGATTCATGTGAAGATTATCATATTTGATCTT

Download sequence (2.1Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc06g053450.2.1	SL2.50ch06:36254858..36261162	593	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc06g053450.2	SL2.50ch06:36254859..36261451	6,593	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc06g053450.2.1.1	SL2.50ch06:36254859..36254933	75	+	n/a
exon	exon:Solyc06g053450.2.1.2	SL2.50ch06:36255254..36255892	639	+	n/a
exon	exon:Solyc06g053450.2.1.3	SL2.50ch06:36257154..36257381	228	+	n/a
exon	exon:Solyc06g053450.2.1.4	SL2.50ch06:36257738..36257869	132	+	n/a
exon	exon:Solyc06g053450.2.1.5	SL2.50ch06:36260458..36261451	994	+	n/a
intron	intron:Solyc06g053450.2.1.1	SL2.50ch06:36254934..36255253	n/a	+	n/a
intron	intron:Solyc06g053450.2.1.2	SL2.50ch06:36255893..36257153	n/a	+	n/a
intron	intron:Solyc06g053450.2.1.3	SL2.50ch06:36257382..36257737	n/a	+	n/a
intron	intron:Solyc06g053450.2.1.4	SL2.50ch06:36257870..36260457	n/a	+	n/a

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Related views

Genetic loci

Tomato locus SlSUN17 (SUN-like protein 17)

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17846242%2Fdetails feature 17846242

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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