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Solanum lycopersicum mRNA Solyc06g008970.2.1

mRNA details  
Name
Solyc06g008970.2.1
Type
mRNA
Length
2,528
Organism
Solanum lycopersicum
Description
ATP-dependent DNA helicase Ta0057 (AHRD V1 **** XPD_THEAC); contains Interpro domain(s) IPR001945 Xeroderma pigmentosum group D protein
Location(s)
SL2.50ch06:2910891..2919396
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0016818
  • GO:0005524
  • GO:0006139
Length
8506
Nb exon
12
Sifter term
GO:0043141
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g008970.2.1 ATP-dependent DNA helicase Ta0057 (AHRD V1 **** XPD_THEAC); contains Interpro domain(s) IPR001945 Xeroderma pigmentosum group D protein

TTTTTTCACTCAGAAAACAAGAAAATCAGCAAACCCCAGAAGATGAAATTCCAATTAGAAGATGTAACAATCTATTTTCCATATGATAACATATATCCAGAACAGTATCAATACATGTTAGAACTCAAAAGAGCTTTAGATGCAAAAGGGCATTGTCTTCTTGAAATGCCTACAGGAACTGGTAAAACAATTGCTTTACTTTCTTTAATTACAAGTTACAGACTTTCAAAACCATCAAATCCAATTAAGCTTCTTTATTGTACAAGAACTGTACATGAAATGGAGAAAACATTAGCTGAGCTTAAATTGTTGTATAATTATCAGTTACAGCATTTCGGGCCGGGGGCTCGAATGCTGGCAATTGGGTTGTCATCAAGAAAGAATTTGTGTGTGAACCCATCTGTGGTTTCTGCTGAGAATAGGGATTCTGTTGATGCTGGTTGTAGGAAACTTACTGCTAGTTGGGTTAGAGCAATTGCTGTTGAAAATCCAAATATTCCTACTTGTTCCTATTATGAGAATTATGATACTGCTGATAAGGCTGGTACTTCCACTTTGCCTGCTGGAGTTTATACTTTGCAGGAGCTAAGATTGTTTGGTAAGGAGAAAGGCTGGTGCCCGTACTTTCTGGCGAGGCATATGGTGCAGCAGGCAAATGTTGTGGTTTACAGCTACCAATACCTTCTTGATCCCAAGGTTGCTGGTATCATATCAAAGGAGATGGAGAGAGAGTGTGTCGTAGTGTTTGATGAGGCCCATAATATAGACAATGTATGTATTGAGGCACTTAGTGTCAGTGTGAGGAAGCAAACACTTGAAGGGGCAACAAGGAATCTCAGTAGGATGTCTAATGAAATTGAAAGGCTGAAGGCTACTGATGCTGGTCGATTGCGGGTTGAGTATAATCGTCTAGTTGAGGGTCTAGCTCAAAGACTGCCCGCTCAGGATGTATGGCTTGCTAATCCCGCCTTGCCTGATGACATCATGAAGGAGGCAGTGCCAGGAAATATAAGGAAAGCAGAGCATTTCTTGTCTGTTTTGCGAAGATTTGTCCAGTATCTTAATGGGCGTCTGGAGACTGATAATGTAGAAAAAGAAGGCCCTGTTGCCTTTGTTGCTTCTATTAATACACAAGTTGGAATTGATCAAAAGATGTTAAAATTTTGTTATGATAGGCTTCACTCCCTTATGTTAACCCTGGAGATTACTGATACAGATGAGTTTCTGCATATACAAACTGTTTGTGACCTTGCCACGTTGGTAGGGACGTACGCTCGGGGCTTTTCCATTATAATTGAACCATATGACGAGAGGATGCCACATATTCCTGATCCTGTCCTGCAGCTTACCTGTCACGATGCCTCTCTTGCCATAAAGCCTGTTTTTGAACGATTCCAATCTGTTGTGATTACCTCGGGGACCCTCAGTCCAATTGATCTCTATCCTCGTCTTCTCAATTTTAATCCGGTAGTAAGTCGAAGCTTCAAGATGTCACTGACAAGGGATTGCATATGCCCAATGGTCCTTACCCGGGGAAGTGATCAGCTTCCTGTAAGCACTAAGTATGACCTGAGAAGCGATCCGGGCGTCGAGAAAAATTATGGGAAGCTTTTGCTAGAAATGGTTTCTGTTGTTCCAGATGGGGTTGTCTGTTTTTTTGTCAGTTACTCTTATATGGATGGAATTGTCAACAGTTGGCATGAATCAGGAATATTAAAGGATATAATGCAACATAAACTTGTATTTATCGAGACCCAAGATGTTGTAGAGACTACATTGGCTTTGGATAATTATCGCAAGGCTTGTGATAGTGGGAGGGGTGCAGTTTTCTTCTCAGTTGCTAGGGGAAAAGTGGCTGAAGGTATAGACTTTGATAGACACTATGGGAGGCTTGTTATCATGTTTGGCGTTCCATTCCAATACACATTAAGCAGAATATTGCTTGCACGATTGGAATATCTGAGGGAGACCTTCCAAATAAAAGAGGGCGATTTTCTGACTTTTGATGCTTTGAGGCAAGCTGCTCAATGTGTGGGTCGAGTTATTCGTTCAAAGGCAGATTATGGCATGATGATTTTTGCTGATAAAAGATATAGCCGTCATGATAAGCGCTCCAAGTTGCCTGGATGGATACTTTCACATTTACGTGATGCTCACCTGAACTTAAGTACAGACATGGCCGTGTATATAGCAAAAGAGTTTTTGAGAAAAATGGCTCAACCATATGATAAGAACGGTGCTCTGGGCAAGAAAACTCTACTGTCACAAGAAGACTTGGAGAATATGATCACCGGCCCTGATGGGGAAATGTTGCTTTAAGTGCCAGTACTAGGTGAGAAATCATTTTTGCTAATCTGTTCCCCGGAATTCTCAGTGTTCTATATGTGGAACAGCACGATTACTACATCCGTTAAAATTTCAAGTGAACTGATTCCTGTTAAAGATTTGTAGCAACCTTCAGTTTTGGGCGACTTCACTACTTTTAGAGCTGACTTAATTGGAATTTCATGAAGCTTGTACATTTCCGG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g008970.2.1SL2.50ch06:2911099..2919354759-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g008970.2SL2.50ch06:2910891..29193968,506-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g008970.2.1.1SL2.50ch06:2918815..2919396582-n/a
exonexon:Solyc06g008970.2.1.10SL2.50ch06:2912164..291224077-1
exonexon:Solyc06g008970.2.1.11SL2.50ch06:2911785..2911893109-n/a
exonexon:Solyc06g008970.2.1.12SL2.50ch06:2910891..2911219329-n/a
exonexon:Solyc06g008970.2.1.2SL2.50ch06:2917618..2917898281-1
exonexon:Solyc06g008970.2.1.3SL2.50ch06:2916692..291676877-2
exonexon:Solyc06g008970.2.1.4SL2.50ch06:2916194..2916597404-n/a
exonexon:Solyc06g008970.2.1.5SL2.50ch06:2915448..2915641194-1
exonexon:Solyc06g008970.2.1.6SL2.50ch06:2915094..2915274181-n/a
exonexon:Solyc06g008970.2.1.7SL2.50ch06:2914831..2914955125-1
exonexon:Solyc06g008970.2.1.8SL2.50ch06:2912621..291271090-1
exonexon:Solyc06g008970.2.1.9SL2.50ch06:2912323..291240179-n/a
intronintron:Solyc06g008970.2.1.10SL2.50ch06:2912241..2912322n/a-n/a
intronintron:Solyc06g008970.2.1.11SL2.50ch06:2911894..2912163n/a-n/a
intronintron:Solyc06g008970.2.1.12SL2.50ch06:2911220..2911784n/a-n/a
intronintron:Solyc06g008970.2.1.2SL2.50ch06:2917899..2918814n/a-n/a
intronintron:Solyc06g008970.2.1.3SL2.50ch06:2916769..2917617n/a-n/a
intronintron:Solyc06g008970.2.1.4SL2.50ch06:2916598..2916691n/a-n/a
intronintron:Solyc06g008970.2.1.5SL2.50ch06:2915642..2916193n/a-n/a
intronintron:Solyc06g008970.2.1.6SL2.50ch06:2915275..2915447n/a-n/a
intronintron:Solyc06g008970.2.1.7SL2.50ch06:2914956..2915093n/a-n/a
intronintron:Solyc06g008970.2.1.8SL2.50ch06:2912711..2914830n/a-n/a
intronintron:Solyc06g008970.2.1.9SL2.50ch06:2912402..2912620n/a-n/a
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Related viewsNone found
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