Solanum lycopersicum mRNA Solyc05g053410.2.1

mRNA details  
Name
Solyc05g053410.2.1
Type
mRNA
Length
3,693
Organism
Solanum lycopersicum
Description
Phytochrome B2
Location(s)
SL2.50ch05:63501873..63507061
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005515
  • GO:0016020
  • GO:0008152
  • GO:0018298
  • GO:0005524
  • GO:0007165
  • GO:0006355
  • GO:0018106
  • GO:0045449
Length
5189
Nb exon
4
Sifter term
  • GO:0042802
  • GO:0009883
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g053410.2.1 Phytochrome B2

TATATATTTGTCTTGCTTCTCTCTCCTTTTTTCCTTCACTATAAAGAAAAAAAAATTGTTGTTGTTCTTCAAATATGCAGTAATCTTGTTGTTGAGTGATTCAAAAATGGCTTCTGGGAGTGGAAGTAGAGGAAAACATGATCGTAATCATCAGCCGAAGAATCAATCGCAATTTTCAGGTACAAGTAATACTAATGCATTAAGCAAAGCAGTAGCACAATATACTACTGATGCTAGGCTACATGCTGCATTTGAACAATCTGGAGAATCTGGAAAGAATTTTGATTATTCACAATCTGTTAGAAATAGTACAGAATCTGTAACAGAGCATCAAATTACTGCTTATTTGAATAAAATGCAAAGAGGGGGTCATATTCAGCCTTTTGGTTGTACGATAGCTGTTGAAGAGGCGAGTTTTTGTGTTATTGCTTATAGTGAAAATGCATGTGAGATGCTTGATATAATGCCGCAATCAGTTCCAAGTCTTGAGAAGAATGAAATTCTCAAGATTGGAACGGATGTGAGGACCCTTTTTAGTTCTTCGAGTTCTGGTTTGCTTGAAGGTGCTTTTGGGGCACGAGAAATTACGTTGTTGAATCCGATTTGGGTTCATTCGAAGAATTCGGGGAAACCCTTTTATGCGATATTGCATAGGATTGATGTGGGGATTGTGATTGATTTAGAGCCAGCTAGAACAGAGGACCCTGCATTGTCTATTGCTGGAGCTGTGCAATCGCAGAAGCTAGCTGTGAGAGCTATTTCGCTTTTGCAATCGTTACCTGGTGGGGATATTGATCTTTTGTGTGATACTGTTGTTAAGAGTGTCAGGGAGCTTACGGGGTATGATCGGGTGATGGTGTATAAGTTTCATGATGATGAGCATGGGGAGGTCGTGGCGGAGAGTAGAAGATCGGATTTGGAGCCTTATATTGGTTTGCATTATCCAGCTACTGATATTCCACAAGCATCAAGATTCTTGTTTAAGCAGAACAGGGTTAGAATGATTGTGGATTGCACTGCCATCCCTGTGAGGGTTATTCAGGATGAATCACTCATGCAGCCTTTATGTTTAGTTGGCTCAACACTTAGGGCTCCTCATGGTTGTCACCCTCAGTATATGGTCAATATGGGAAATGTTGCGTCGTTAACACTTGCTGTTGTTATAAATGGAAATGATGATGAAGTTGTTGGAGGCCGAAATGCAATGAGATTATGGGGTTTGGTTGTTGGGCACCACAGTTCAGCTCGGTTCATTCCTTTCCCCCTTCGTTATGCCTGTGAATTCCTTATGCAGGCCTTTGGGCTCCAACTAAACATGGAATTACAATTGGCATCGCAGTTGGCTGAAAAGCGGGTTTTGAGGACACAGACAGTGTTATGTGACATGCTTCTCCGAGACTCACCCACGGGGATTGTTACTCAGAACCCAAGTATTGTCGACCTTGTGAAATGTGATGGGGCTGCTTTGTACTACCAAGGGAGATACTATCCTTTGGGAATTACACCAACTGCAGCCCAAATAAAGGGCATTGTGGAGTGGCTATTAACTTGTCATGTGGACTCAACAGGCCTAAGTACTGATAGTTTGGCTGATGCAGGGTATCCTGAGGCAGCTTCTCTGGGTGCTGCTGTTTGTGGGATGGCTGTTGCTTATGTAACTTCAAAATATTTCCTTTTTTGGTTCCGTTCGCACACTGCGAGTGAGATAAAGTGGGGTGGTGCAAAGCATCATCCAGAAGACAAAGATGATTGGCAGAAAATGCATCCACGTTCTTCCTTTAAGGCATTTTTGGAAGTTGTTAAGAACCGCAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATACTACGTGATTCATTCAAGGATGCAAGTAATTCAAAGTCTATTGTGCGTGTTCAGCTTCGGGAAGAGGGGTTGCAAGGGATGGATGAACTTAGATCTGTTGCCAGAGAAATGGTTAGATTGGTGGAGACTGCTACAGCACCCATATTTGCCGTTGATGTTGAAGGTCGCATAAATGCATGGAATGCTAAAGTTGCCGAGTTGACAGAGTTGTCAGTTGAAGAAGCAATAGGGAAGTCGTTGGTTCATGATCTTGTCCATGAAGAATCACAGACAACTGCGCAGAACCTTCTCCGCAAAGCTTTAAGAGGTGAAGAAGATAAGAACATAGAAATAAAGTTAAGGACATTTGGAGCTGAGCAACTGAAGAAGACGGTTTTTGTGGAGGTTAATGCTTGCTCTAACAAAGACTACACAAATAACATTGTTGGTGTCTCCTTCATTGGCCAGGATATTACCGCCCAAAAAGTTGTACTGGACAAATTTGTTCGCATACAAGGTGATTACAAGGCCATTATGCACAGCCCTAATCCTCTGATCCCGCCCATTTTTGTATCAGATGAGAACACTTGTTGCTTTGAGTGGAACACTGCGATGGAAAAACTTAGTGGTTGGAACAAAGAAGAAATCATTGGGAAAATGTTGGTTGGTGAGATTTTTGGCACTTTCTGCCGGCTCAAGGGCCCAGACGACATGACAAATTTCATGATCATGTTGCATAAGGCAATTGGAGGCCAGGAGATAGACAAGTTCCCTTTTTCCTTTTCTGACCGAAATGGAAAATTTGTTCAAGCTCTTTTGACTGCAAACAAGAGAGTCAATGTGGATGGCCAAATTATTGGGGCCTTTTGTTTCTTGCAGATTGCAAGTCCTGAATTGCAGAAAACTCTAATGCAGAGACAACAAGAGAAGACGAGTAACATTCACATGAAAGAGTTGGCTTACATTTGTCGGGAATTAAAGAATCCTCTAAATGGTATACGCTTTACAAATTCATTATTAGAGGCCACAGAATTGACAGAAAACCAGAAGCAGTTTCTGGAAACAAGTGCTGCTTGTGAGAGGCAGATGTCCAAGATCATAAGGGATATTGATCTGGACAATATTGAGGATGGTTCCCTGGAGCTTGAGAAAGGTGAATTTTTTCTTGCGAGTGTGATAGATGCTGTTGTTAGCCAAGTGATGTTATTATTGAGGGAAAGAGGAGTTCAACTTATCCGTGATATTCCAGACGAAATCAAGACATTGAGGGTCTATGGAGATCAAGTCAGAATTCAACAGGTTTTCGCTGATTTCTTACAGATTATGGCAAGCTATGCACCACCCCGGGAAGGGTGGGTAGAAGTCCATCTTCGACCAAGTATAAAGCAAATTTCTGATGGAGTAACTATAGTACATATCGAGTTCAGGATTGTTTGCCCTGGTGAAGGTCTTCCTCCAGAATTGATCCAAGATATGTTCCATAATAGTTTGTGGGTAACTCAACAAGGTCTAGGGCTAAGCATGTGTAGAAGAATCCTACAGCTTATGAATGGTCAAGTCCAGTATATCAGAGAATCAGAAAGATGTTTTTTCCTTATTATCCTTCAACTACCAATGCTGATTCAATGATAGTTCAACAACAGCTATATTCATCACAAAATGTACATTATGACTGAGCAACTACTGATACAGGTATTGAAATCATCCTTGTGCTGTTGAATAATAATCTGTTGGTTTTTGAAGCATCTACTGTAACAGGACTAATTTTTATAACACCATAGGCTTGATGATATCAAGCTATTGTAATTAGTATTATTCTAACAAAATTTCATAGTTGTATGATAATGTGT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g053410.2.1SL2.50ch05:63502093..635069551,122-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g053410.2SL2.50ch05:63501873..635070615,189-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g053410.2.1.1SL2.50ch05:63504891..635070612,171-2
exonexon:Solyc05g053410.2.1.2SL2.50ch05:63503058..63503862805-1
exonexon:Solyc05g053410.2.1.3SL2.50ch05:63502396..63502689294-1
exonexon:Solyc05g053410.2.1.4SL2.50ch05:63501873..63502295423-n/a
intronintron:Solyc05g053410.2.1.2SL2.50ch05:63503863..63504890n/a-n/a
intronintron:Solyc05g053410.2.1.3SL2.50ch05:63502690..63503057n/a-n/a
intronintron:Solyc05g053410.2.1.4SL2.50ch05:63502296..63502395n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17831981%2Fdetails feature 17831981
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