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Solanum lycopersicum mRNA Solyc05g044510.1.1

mRNA details  
Name
Solyc05g044510.1.1
Type
mRNA
Organism
Solanum lycopersicum
Synonyms / aliases
mRNA:Solyc05g044510.1.1
Length
2,199
  
Description
Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related
Location(s)
SL2.50ch05:56697170..56703427
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005524
  • GO:0008270
Length
6258
Nb exon
15
Sifter term
GO:0004003
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g044510.1.1 Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related

ATGAGGATCCATTCTCATCCTTCCTCATCTTCAACCGAAGATGAAGCTGATAATTTGATGAATGAAGCCCAAGTAGGTGGATTTGTTGACACTGATTTAACTGCGGAAGCAGTTTGTCCCAATATAACAAAGGGTGAATGCAGTATTAAAATAAAAGAAGAGCAGGTAGAACAAGATGGTGTAATAAATGATGTAGGAAATGGTGGTGACATTTTATTGATGTGGCAAAAATGGGAAGAAGAGAACGATAGGTGGATGGAAGAAAACTATGCACTTTATCTAGACTTCAATAGTCAGAATGAGTTTATGACTGAAACTGCTGAGCAGCCATCTGATTTGATCATACCCTTGCTAAGGTATCAGAAAGAATGGTTGGCTTGGGCTTTGAAGCAAGAAGAATCTATAGTTAGAGGCGGCATTCTTGCAGATGATATGGGGATGGGGAAGACTGTTCAAGCCATAGCTCTTGTGCTAGCTAAACGTGGAATAGGGCAAGCAATTTCAGATTCCGGTTTGCTCTCACCTGCCCCCTGTATTCTTCAAGCAGTGAAAGGAACCCTTGTTATTTGTCCAGTTGTTGCTGTGATTCAGTGGGTCAACGAGATTGAACGCTTCACTACAAAAGGAAGCAACGCAATTTTTGTATATCATGGTGCCAACAGGGAGAAAAATATTTGCAGATTCGCGGAATATGATTTTGTTATCACTACCTACTCAACAGTGGAGACTGAGTACAGGAAAAATATAATGATTTTGCACTCTATGAATTGGAATCGTATTATTTTGGATGAGGCCCATTGTGTGAAAAATATACGCAGCAACACTACAAGAGCTATTCTTTCGCTAGAATCTTCTTATAAGTGGGCCTTAAGTGGTACTCCCCTACAGAACCGTGTAGGAGAGTTGTACTCACTTGTCCATTTCTTACAAATTATTCCTTACTCGTACTACTTCTGCGAAGATTGTGATTGCAGAGCTCTCGACAATAGCTCATTCGAGTGTCCACATTGCCACCACCAATCTTTTCGACACTTTTGCTGGTGGAATAGATATATTGCATCACCCATACAATCTCAAGGGAATCATGGGTTTGGTAGAGATGCGATGGTTCTGTTGAAACACAAAATTTTAAAAACCATAATGCTAAGACGTACTAAAAAGGGAAGGGCTGCTGATCTTGGACTTCCTCTAAAGATCGTTACCTTGCGCAAAGATTGTTTCGATGTTAAGGAAGAAGAGTATTACAGATCATTGTGGGATGAAAGTCGGGCACAATTCAATATGTACATTCAAGCTGGTACATTGATGAATAACTATGTTAACATTTTTAATCTACTCACACGCATGCGGCAGGCCGTCGATCATCCTTACCTTGTGGAATGCTCAAGTTCTTCTTTGGCTAGAAGTGGAAGAACAACTAATGTTGGCTATGTTGAACAAACATGTGGTTTATGTCATGATCCAGCAAAAGATCCAATCGTTAATTCTTGCACACATGTCTTTTGCAAGTCATGTCTAATAAACATTTCTGCAATTGTGGAACAACTTTCATGCCCTTCATGTTTTAAATCAATTACAGTGGATTTCACAGCAAATGATCAGAAAACTAAAGCAACAATCAAAGGATTTAGGTCCTCGAGTATATTGAACAGAATTTGCCTTGATAATTTTCAGACAAGCACAAAAATAGAAGCGTTGAGAGAAGAAATAAGGTTCATGATTGAAAGAGAAGGTTCCGCAAAGGCAATAGTTTTCAGCCAATTCACATCATTTTTGGATCTGATACACTATTCTCTACAGAAGTCGGGTATTAATTGTGTTCAATTAGATGGATCCATGACTATCACTGCAAGAGATTCTGCAATTACAAGATTTACCAGTGATCCAGATTGCATTATATTTCTCATGAGTTTGAAAGCCGGAGGTCTTTCCCTGAATCTTACAGTGGCATCACACGTTTTTTTTATGGATCCTTGGTGGAATGCTGCTGTGGAGAGGCAAGGTGAAGATAGAATCCATCGAATAGGGCAGTTTAAACCAACAAGGATTGTGAGATTTGTGATTGAGAATACAATCGAGGAGAGGATCTTAGAGTTGCAAGAGAAGAAAAAACTACTTTTTGAAGGGACGGTTGGTGGTGCTTCGGAGGCATTGGAGGAATTAACAGAGGCAGACTTGAAGTTCTTATTTGTAACCTAA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g044510.1.1SL2.50ch05:56697169..56703427733-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g044510.1SL2.50ch05:56697170..567034276,258-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g044510.1.1.1SL2.50ch05:56703388..5670342740-n/a
exonexon:Solyc05g044510.1.1.10SL2.50ch05:56698346..56698564219-n/a
exonexon:Solyc05g044510.1.1.11SL2.50ch05:56698072..56698176105-n/a
exonexon:Solyc05g044510.1.1.12SL2.50ch05:56697826..56697978153-n/a
exonexon:Solyc05g044510.1.1.13SL2.50ch05:56697516..5669760489-n/a
exonexon:Solyc05g044510.1.1.14SL2.50ch05:56697365..5669744581-1
exonexon:Solyc05g044510.1.1.15SL2.50ch05:56697170..5669724273-1
exonexon:Solyc05g044510.1.1.2SL2.50ch05:56701351..56702102752-2
exonexon:Solyc05g044510.1.1.3SL2.50ch05:56700957..56701079123-n/a
exonexon:Solyc05g044510.1.1.4SL2.50ch05:56700795..5670086874-n/a
exonexon:Solyc05g044510.1.1.5SL2.50ch05:56700511..5670057161-1
exonexon:Solyc05g044510.1.1.6SL2.50ch05:56700267..56700413147-n/a
exonexon:Solyc05g044510.1.1.7SL2.50ch05:56700095..5670018086-n/a
exonexon:Solyc05g044510.1.1.8SL2.50ch05:56699740..5669980970-1
exonexon:Solyc05g044510.1.1.9SL2.50ch05:56699075..56699200126-n/a
intronintron:Solyc05g044510.1.1.10SL2.50ch05:56698565..56699074n/a-n/a
intronintron:Solyc05g044510.1.1.11SL2.50ch05:56698177..56698345n/a-n/a
intronintron:Solyc05g044510.1.1.12SL2.50ch05:56697979..56698071n/a-n/a
intronintron:Solyc05g044510.1.1.13SL2.50ch05:56697605..56697825n/a-n/a
intronintron:Solyc05g044510.1.1.14SL2.50ch05:56697446..56697515n/a-n/a
intronintron:Solyc05g044510.1.1.15SL2.50ch05:56697243..56697364n/a-n/a
intronintron:Solyc05g044510.1.1.2SL2.50ch05:56702103..56703387n/a-n/a
intronintron:Solyc05g044510.1.1.3SL2.50ch05:56701080..56701350n/a-n/a
intronintron:Solyc05g044510.1.1.4SL2.50ch05:56700869..56700956n/a-n/a
intronintron:Solyc05g044510.1.1.5SL2.50ch05:56700572..56700794n/a-n/a
intronintron:Solyc05g044510.1.1.6SL2.50ch05:56700414..56700510n/a-n/a
intronintron:Solyc05g044510.1.1.7SL2.50ch05:56700181..56700266n/a-n/a
intronintron:Solyc05g044510.1.1.8SL2.50ch05:56699810..56700094n/a-n/a
intronintron:Solyc05g044510.1.1.9SL2.50ch05:56699201..56699739n/a-n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17827261%2Fdetails feature 17827261
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