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Solanum lycopersicum mRNA Solyc05g015040.2.1

mRNA details  
Name
Solyc05g015040.2.1
Type
mRNA
Length
2,452
Organism
Solanum lycopersicum
Description
ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal
Location(s)
SL2.50ch05:9724620..9743463
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0004386
  • GO:0008026
  • GO:0005524
Length
18844
Nb exon
16
Sifter term
GO:0004004
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g015040.2.1 ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal

ATGGGGGATTTACCTATAGTACGATTTGAGGAGAAAATCGTAGAAACAGTGAAGGAAAACCCAGTAGTAGTTGTTATTGGTGAGACTGGTTCTGGTAAAAGTACACAACTTCCACAAATACTTTACCGAAGGGGCTATGCTAAATCTGGAATCATCGCTGTTACTCAGCCTCGCCGTGTTGCTGCTGTTTCTGTTTCTAGACGAGTTGCACAGGAGCAAAATGTTCGAATTGGAGAGGAAGTCGGTTATGCCATAAGATTTGAAGATAGAACTTCGGAAAAAACCCGTATCAAGTATCTTACGGATGGAGTGCTCCTTCGCGAGAGTCTTTTTAATCCGGAGCTGAATCAGTATTCGGTCATCATATTGGATGAAGCTCATGAGAGGAGTTTGAACACGGATATATTGCTAGGTCTAATGAAAAGATTAATCAAATGGCGTCACTCAAACTTGAAAGTCTTGATCACATCAGCAACTCTTGATGGTGGAAAGGTATCTAGGTTCTTCTCTGACTGCCCCGTCCTTACTGTGCCAGGAGAGTTATTTCCCGTGGAAATAGTACACATCTCAGAGCCTCCTAAAAGCTATGTCGAAGCTTCTTTAAAAAAAGCTATTGATATTCACGTACGGGAGCCAGAAGGAGACATTTTAATATTTATGACAGGGCAGGATGACATAGAGAAGTTGGTACTGAAGTTGGAGGAGAGAGTTCAAAGTTTAGAAGAAGGTTCTTGTATGGATGCCCTAATCCTTCCTCTTCATGGATCCTTACCACCTGAGATGCAGGTGCGTGTTTTCAGTCCTCCGCCTCCAAATTGTAGGCGGTTTATTGTTTCTACAAATATTGCTGAAACTTCCTTGACTGTTGACGGTGTTGTGTATGTTATTGACTCTGGGTATGTGAAGCAGCGACAGTATAACCCATCCACTGGCATGTACTCGTTAGAGGTTGTTCAGATTAGCAAGGTGCAGGCAAAGCAGCGTGCAGGACGTGCTGGAAGAACACGTCCTGGAAAATGTTATCGTTTATATCCCTCTACCGTTTACCATGATGACTTTTTGGATGCAACGGTTCCTGAAATACAAAGGTCTTCACTGGCTGGAACTGTACTTTATTTGAAGTCCTTAGATCTTGCCGATATGGATATTCTCAAATTTGATTTTCTCGACTCTCCTTCCGTCAAGTCTTTGGAGGATGCCTTGAAGCAATTATATTTAGTCGATGCACTTGATGAAAATGGTTCAATCACAAGTCTTGGACGAAAAATGGCTGAGCTTCCACTGGAACCTTCTCTTTCGAGGACCTTATTAGAGGCAAATGAGTTGGATTGCTTGTCCCAAGCATTGACTGTTGTTTCCATGTTGTCTGCTGAGACCACATTGCTTCCCGCCCCAAGTAAGAGCTCTGAGAAGAAGAGGAGGCACACTCCTTCGAACCTTCCTGATGGTTTTGGCTTGGGTGATCACATCCAGCTACTCCAAATTTATGAGCAATGGTACCAGACCGACTACAACATAGACTGGTGTAAAGAAAACAACTTACAGGTCCGCGGGATGTTGTTTGTGAGAGATGTCAGGAAACAGTTATCTCAAATAATGCAAAAAATCACTGAAGGCTCATTAGATGTCCAAACAAGCAATAGACGGAGAGGTGGCCAACAGGAGTACAAAAATTTGAGGAAAGCACTGTGCATTGGCTACGCAAATCAGCTTGCTGAACGAATGATTCGACATAACGGGTATCGGCCTCTTGGTTTCAAGTCTGAACTCGTACAGGTCCATCCATCTTCTGTGCTAAAATCAGATGAGGATGGGATGCTTCCAAACTATGTCGTCTATCATGAATTAATAGTTACATCACGCCCATTTATGCGTAATGTATGTGCAGTTGAGATGCGATGGGTTGCACCAATCTTAGCGAAGCTTGAGAAACTAAATGTGTTCAAACTGAGTGGGGGATCTAGCCAGCCTGATAACCAAATTCAAGAAGTAGCTTTGACTGTGGAAAAGAAAGAAATTGCTGCAGTTCAGCCACCCGAAGACCGTGCCAGCATGATACAAGCTGCTCGGGAACGATTTCTAGCTCGGAAAGGTCAGAAGTAGCATTACAATGGTTGTTCGACAGATTAACTGGTTATGCGCATGCACTGTCCTTGCCACAAAATTGGCTGCTACTCAGCTGGAAGTGGAGTGTAACCCTTTCTTAATATTCATGATGGGAGGGTGTAATTCTCCCACTTGATGCAGAAATCTGGCCCATCTGATTCATGAGTGGCACCAAAAGGTTTTTGAAGAATGGTCAGATGAATTATATATACCTTTCTCGGGCTTTGAGTAAGATCAAGTGTAGTGTCTGTTCTATCAGTTTAATATATGATACGTGGGTCGTTGGTCCACAAGATATTAACAAGAATGATCAGATGTATGTTTGATATCAAGTTCTAATGGATGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g015040.2.1SL2.50ch05:9724619..9743114701+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g015040.2SL2.50ch05:9724620..974346318,844+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g015040.2.1.1SL2.50ch05:9724620..9724819200+n/a
exonexon:Solyc05g015040.2.1.10SL2.50ch05:9733609..973370193+2
exonexon:Solyc05g015040.2.1.11SL2.50ch05:9733975..9734098124+2
exonexon:Solyc05g015040.2.1.12SL2.50ch05:9738857..9739004148+1
exonexon:Solyc05g015040.2.1.13SL2.50ch05:9739163..973923270+n/a
exonexon:Solyc05g015040.2.1.14SL2.50ch05:9739503..9739663161+2
exonexon:Solyc05g015040.2.1.15SL2.50ch05:9742705..9742880176+n/a
exonexon:Solyc05g015040.2.1.16SL2.50ch05:9742964..9743463500+1
exonexon:Solyc05g015040.2.1.2SL2.50ch05:9726116..972620893+1
exonexon:Solyc05g015040.2.1.3SL2.50ch05:9726325..9726429105+1
exonexon:Solyc05g015040.2.1.4SL2.50ch05:9726589..9726806218+1
exonexon:Solyc05g015040.2.1.5SL2.50ch05:9726973..972702553+2
exonexon:Solyc05g015040.2.1.6SL2.50ch05:9727158..9727274117+n/a
exonexon:Solyc05g015040.2.1.7SL2.50ch05:9727900..972799192+n/a
exonexon:Solyc05g015040.2.1.8SL2.50ch05:9732687..973277387+1
exonexon:Solyc05g015040.2.1.9SL2.50ch05:9733280..9733494215+1
intronintron:Solyc05g015040.2.1.1SL2.50ch05:9724820..9726115n/a+n/a
intronintron:Solyc05g015040.2.1.10SL2.50ch05:9733702..9733974n/a+n/a
intronintron:Solyc05g015040.2.1.11SL2.50ch05:9734099..9738856n/a+n/a
intronintron:Solyc05g015040.2.1.12SL2.50ch05:9739005..9739162n/a+n/a
intronintron:Solyc05g015040.2.1.13SL2.50ch05:9739233..9739502n/a+n/a
intronintron:Solyc05g015040.2.1.14SL2.50ch05:9739664..9742704n/a+n/a
intronintron:Solyc05g015040.2.1.15SL2.50ch05:9742881..9742963n/a+n/a
intronintron:Solyc05g015040.2.1.2SL2.50ch05:9726209..9726324n/a+n/a
intronintron:Solyc05g015040.2.1.3SL2.50ch05:9726430..9726588n/a+n/a
intronintron:Solyc05g015040.2.1.4SL2.50ch05:9726807..9726972n/a+n/a
intronintron:Solyc05g015040.2.1.5SL2.50ch05:9727026..9727157n/a+n/a
intronintron:Solyc05g015040.2.1.6SL2.50ch05:9727275..9727899n/a+n/a
intronintron:Solyc05g015040.2.1.7SL2.50ch05:9727992..9732686n/a+n/a
intronintron:Solyc05g015040.2.1.8SL2.50ch05:9732774..9733279n/a+n/a
intronintron:Solyc05g015040.2.1.9SL2.50ch05:9733495..9733608n/a+n/a
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Related viewsNone found
http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17821611%2Fdetails feature 17821611
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