Solanum lycopersicum mRNA Solyc05g012260.2.1
 mRNA details
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| Name | Type |
Length
2,352
|
Organism |
|
Description
Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal
|
|
Location(s)
SL2.50ch05:5546798..5552510
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0016787
- GO:0046872
- Length
- 5713
- Nb exon
- 13
- Sifter term
- GO:0004722
- GO:0005515
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc05g012260.2.1 Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal
GATCAGCCGAATCATCAATCAGTTTCTATTTATGTATATTTTCATAGAAGTCAACAGTTTATGCTGAAAATCCGGTCGATTGGTCGAATCTTGAGAAAGATTCGAAGAATTTATCCGACCCTTTTTCCCATTTGATTCATCATCAATTCTTATTTAAACTTCAGTTCAAAGCTCTAATTTTTTGACCCATTTCAGTTTCAGCCATAAGGTGGATGCAATGAAAACATTCGTTATGTTGTTGCCCATTTTATGGGTTCTAGTTGCTCTTCAAGGGGTAACATCTCATGAAGATCATCCTCTAGCAAGGATTGCTGTTCATAATGCTATTGCTGCTTTGGATGCTCGTGCGTATATCAAAGCATCTCCTTCTGTCCTTGGGTCAAACGGCCTAAACCAAGAATGGATAACTCTGGAGTATGGCACAGGCAACCCGTCAAATGATGATTGGGTTGGAGTGTTTTCTCCTGCCAATTTCAGTGCAGCTACGTGTGACCCTGAAAATAACATGGTGACTCCACCACTTTTGTGTACAGCTCCTATAAAGTACCAATTTGCAAATCGCTCCAATCCCAACTACAAAAGGACAGGAAAAGGATCGCTAAAGCTTCAATTGATCAACCAGAGATCAGACTTCTCCTTCGCTTTGTTTTCTGGTGGATTACGGAATCCAAAGCTGGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAAATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTGGTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGTATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAGGAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTACGCCAATGGATATCTTTCTCAGTGGGATCAATTTACTTCTCAAGTAGAGCCAATTACTTCAAGAGTACCATACATGATTGCTAGCGGCAACCATGAACGCGATTGGCCTGATAGTGGGTCATTTTATGGTAAAAAGGATTCAGGTGGAGAGTGTGGTGTCTTGGCTCAGACAATGTTCTATTTTCCTGCCGAAAATAGGGATAAGTTCTGGTACTCTACTGATTATGGCATGTTCAGATTCTGTATTGCTGATACTGAACATGATTGGAGAGAGGGCACCGAACAATATAAGTTCCTTGAACACTGCTTCGCATCTGTAGATAGACAGAAACAGCCATGGCTAATCTTCCTTGCACATAGGGTACTTGGTTACTCTTCTGGAGATTTTTACGCTGATGAAGGATCATTTGGAGAACCAATGGGGAGGGACAGCCTTCAAAAGCTTTGGCAGAAGTATAAAGTTGATATCGCCATATATGGTCATGTCCACAATTACGAAAGAACATGTCCCATTTACCAGAATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTT
GATCAGCCGAATCATCAATCAGTTTCTATTTATGTATATTTTCATAGAAGTCAACAGTTTATGCTGAAAATCCGGTCGATTGGTCGAATCTTGAGAAAGATTCGAAGAATTTATCCGACCCTTTTTCCCATTTGATTCATCATCAATTCTTATTTAAACTTCAGTTCAAAGCTCTAATTTTTTGACCCATTTCAGTTTCAGCCATAAGGTGGATGCAATGAAAACATTCGTTATGTTGTTGCCCATTTTATGGGTTCTAGTTGCTCTTCAAGGGGTAACATCTCATGAAGATCATCCTCTAGCAAGGATTGCTGTTCATAATGCTATTGCTGCTTTGGATGCTCGTGCGTATATCAAAGCATCTCCTTCTGTCCTTGGGTCAAACGGCCTAAACCAAGAATGGATAACTCTGGAGTATGGCACAGGCAACCCGTCAAATGATGATTGGGTTGGAGTGTTTTCTCCTGCCAATTTCAGTGCAGCTACGTGTGACCCTGAAAATAACATGGTGACTCCACCACTTTTGTGTACAGCTCCTATAAAGTACCAATTTGCAAATCGCTCCAATCCCAACTACAAAAGGACAGGAAAAGGATCGCTAAAGCTTCAATTGATCAACCAGAGATCAGACTTCTCCTTCGCTTTGTTTTCTGGTGGATTACGGAATCCAAAGCTGGTTGCAGTGTCAAATACTGTTGCCTTTACAAATCCAAATGCACCATTATACCCGCGGTTAGCACAGGGAAAGACATGGAATGAAATGACTGTTACATGGACAAGTGGATATGATATCAATGAAGCAGAGCCCTTTGTGGAGTGGGGCCCACAACGTGGACAACAGACTCGTTCACCGGCAGGGACTTTGACTATCGACCGTAGTAGCTTGTGTGGTGCACCAGCAAGAACTGTTGGATGGCGCGATCCTGGATTCATTCACACTAGTTTTCTGAAGGAGTTGTGGCCCAATTTAGTATATACCTACAAGCTGGGGCATAAACTGTTTAATGGCACGTATATCTGGAGTCAGATGTACAAATTTAAAGCATCGCCCTATCCTGGCCAAAGCTCTCTTCAGCGAGTGGTTATTTTTGGTGACATGGGAAAGGAAGAAGCTGATGGCTCAATTGTGTACAATCAATACCAACCTGGCTCCCTTAACACTACCAAGCAAATCATTGAGGACTTAAAGAACATTGACATAGTCTTTCACATTGGTGATATTGTTTACGCCAATGGATATCTTTCTCAGTGGGATCAATTTACTTCTCAAGTAGAGCCAATTACTTCAAGAGTACCATACATGATTGCTAGCGGCAACCATGAACGCGATTGGCCTGATAGTGGGTCATTTTATGGTAAAAAGGATTCAGGTGGAGAGTGTGGTGTCTTGGCTCAGACAATGTTCTATTTTCCTGCCGAAAATAGGGATAAGTTCTGGTACTCTACTGATTATGGCATGTTCAGATTCTGTATTGCTGATACTGAACATGATTGGAGAGAGGGCACCGAACAATATAAGTTCCTTGAACACTGCTTCGCATCTGTAGATAGACAGAAACAGCCATGGCTAATCTTCCTTGCACATAGGGTACTTGGTTACTCTTCTGGAGATTTTTACGCTGATGAAGGATCATTTGGAGAACCAATGGGGAGGGACAGCCTTCAAAAGCTTTGGCAGAAGTATAAAGTTGATATCGCCATATATGGTCATGTCCACAATTACGAAAGAACATGTCCCATTTACCAGAATATTTGTACAATGACCGAGAAGAACTCGTACAAGGGACCCTTGAACGGGACAATACATGTCGTTGCGGGAGGAGGTGGAGCTGGTCTAGTAAAGTTTACATCCCTCCAGACTAAGTGGAGTATATTCAAAGATTACGATTATGGATTTGTGAAGATGACAGCATTCGATCATTCAAACCTCTTGTTCGAGTACAAGAAGAGCAGCGATGGCAAAGTGTACGACTCTTTCAATATTTCCCGGGATTACAGAGACATCTTGGCATGCACTGTGGATAGCTGCCCAAGCATGACATTGGCATCTTGATTGGTTTATGAAGATGTCTTCAAAAGTTTGATTTCTGTTATATAGCATCCCACTATACCATCATCGTGCACAAAGCATCCTGCGTTCCGAGGAATCCAAGTTCAGATGCACAAACACCAGGAGCCTCACAGATGAACAGTTTGAGTGAATAGATGATAGAGGGAAACAGATTGCTTATTAGCCTTTTTTTCAAGTATTTGTGTTATCATTCAATGTATTGCTATCATCTTTCATAAAACAATTGGCTTAAATGTTCACAACAAGTGTCTCCATAAAACAGCAATATATAATTTGCAGTT
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc05g012260.2.1 | SL2.50ch05:5547096..5551388 | 607 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc05g012260.2 | SL2.50ch05:5546798..5552510 | 5,713 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc05g012260.2.1.1 | SL2.50ch05:5552310..5552510 | 201 | - | n/a |
| exon | exon:Solyc05g012260.2.1.10 | SL2.50ch05:5548647..5548852 | 206 | - | 1 |
| exon | exon:Solyc05g012260.2.1.11 | SL2.50ch05:5548432..5548557 | 126 | - | 1 |
| exon | exon:Solyc05g012260.2.1.12 | SL2.50ch05:5547800..5548109 | 310 | - | n/a |
| exon | exon:Solyc05g012260.2.1.13 | SL2.50ch05:5546798..5547402 | 605 | - | n/a |
| exon | exon:Solyc05g012260.2.1.2 | SL2.50ch05:5551236..5551419 | 184 | - | n/a |
| exon | exon:Solyc05g012260.2.1.3 | SL2.50ch05:5550980..5551071 | 92 | - | 1 |
| exon | exon:Solyc05g012260.2.1.4 | SL2.50ch05:5550763..5550829 | 67 | - | n/a |
| exon | exon:Solyc05g012260.2.1.5 | SL2.50ch05:5550555..5550677 | 123 | - | n/a |
| exon | exon:Solyc05g012260.2.1.6 | SL2.50ch05:5550035..5550127 | 93 | - | n/a |
| exon | exon:Solyc05g012260.2.1.7 | SL2.50ch05:5549749..5549878 | 130 | - | 2 |
| exon | exon:Solyc05g012260.2.1.8 | SL2.50ch05:5549402..5549483 | 82 | - | 1 |
| exon | exon:Solyc05g012260.2.1.9 | SL2.50ch05:5549033..5549165 | 133 | - | n/a |
| intron | intron:Solyc05g012260.2.1.10 | SL2.50ch05:5548853..5549032 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.11 | SL2.50ch05:5548558..5548646 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.12 | SL2.50ch05:5548110..5548431 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.13 | SL2.50ch05:5547403..5547799 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.2 | SL2.50ch05:5551420..5552309 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.3 | SL2.50ch05:5551072..5551235 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.4 | SL2.50ch05:5550830..5550979 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.5 | SL2.50ch05:5550678..5550762 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.6 | SL2.50ch05:5550128..5550554 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.7 | SL2.50ch05:5549879..5550034 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.8 | SL2.50ch05:5549484..5549748 | n/a | - | n/a |
| intron | intron:Solyc05g012260.2.1.9 | SL2.50ch05:5549166..5549401 | n/a | - | n/a |
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